Array 1 229736-227997 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHUAO010000005.1 Salmonella enterica subsp. enterica serovar Derby strain LN19MPS18 YZU1515_005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 229735 29 100.0 32 ............................. CGAATATATATGATATCGAATAACGAAGCAAA 229674 29 100.0 33 ............................. CGCCTGATCCCGGTACTCCAGAGTATTTCCAGT 229612 29 100.0 32 ............................. TCTAACACTCAAAGGTGGAATGACAGAGCCTT 229551 29 100.0 32 ............................. TTTGCCACGCACCGCAAACAGGCAGTCTTCAC 229490 29 100.0 32 ............................. CACGCCGCCATCACTGACAGCACAAAAACAAA 229429 29 100.0 32 ............................. GATGAGTACATGGAAAGCTTTAAGCAAAAGTT 229368 29 100.0 32 ............................. GCGATAGCTGTTTTCATAACGTGATCTCCAAT 229307 29 100.0 32 ............................. GGGTAAAAAACTATACGATCCGCGCTTAGGGG 229246 29 100.0 32 ............................. GGACAATTTGTGCTTTTGCAATTCACTTTGAA 229185 29 100.0 32 ............................. TTTGTATTTAAACAATAAGGCGAATTATGAAA 229124 29 100.0 32 ............................. GTTCCACAGGACGTTGAGAACGGCTTTATACA 229063 29 100.0 32 ............................. AGACGATGGCGGAGGCGCAGAAATCTAACCTG 229002 29 100.0 32 ............................. CTGATTGACATGACGTCCGGCGACGACTGGAA 228941 29 100.0 32 ............................. GTCTATAACCGTCGCCTCACGACTCGGCATGT 228880 29 100.0 32 ............................. CGCCCGGAATCAGCGCCGTCTATTGAGGGGTT 228819 29 100.0 32 ............................. AACGATATCACCGTACTGGCGAAAACGCTGCG 228758 29 100.0 32 ............................. CCCGATAATTCTATATCGGGCATTGATTACTG 228697 29 100.0 32 ............................. ACTGGCAGCACATAACCGGTTCGGACGCAGCC 228636 29 100.0 32 ............................. AGATTGAGCGCCGCACTAACCAGCGCATGATC 228575 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 228514 29 100.0 32 ............................. GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 228453 29 100.0 32 ............................. GAGAGGCCGACTCAGCAACCAAAAAAGGGAAG 228392 29 100.0 32 ............................. AACGCGCAGCGCAGCAAAAAGCCGAGCTGGAG 228331 29 96.6 32 .............T............... CTGTTAACAGGGGGAATGCTGAAGCAGCGAAA 228270 29 96.6 32 .............T............... CGTGACTACTGCAACTTAAATCACGACGAAAT 228209 29 96.6 32 .............T............... TCTCTGCCGCTACCGCGCTGGACTGCGCCGCC 228148 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 228087 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 228026 29 93.1 0 A...........T................ | A [227999] ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTAGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 247197-246376 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHUAO010000005.1 Salmonella enterica subsp. enterica serovar Derby strain LN19MPS18 YZU1515_005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 247196 29 100.0 32 ............................. ACAACGCCGGGCCGGGGCGGGGGGCGGAAGCT 247135 29 100.0 32 ............................. CCGCATCATTACTGACCTGAACGCCCCGCAAG 247074 29 100.0 32 ............................. CCTGACAATTTGAAATACTCCGCTGAAATGAT 247013 29 100.0 32 ............................. TCAACGGCCTGCCGGGTAAATCGGTTCACGTG 246952 29 100.0 32 ............................. TTGACGAGCGGTGATGTGTGCCGGAGTGGATA 246891 29 100.0 32 ............................. TGATATGAGGCAAACGGCAGGTTACGCGCCAG 246830 29 100.0 32 ............................. TCTTTTTGCATCAGCGACCAGAGCCGCTTGTA 246769 29 100.0 32 ............................. GAGTGAGAATGTTCTTCATAGCAGGGGCAAAC 246708 29 100.0 32 ............................. ATGCGCGTAACGGTCATTATGTTAAATAGAAC 246647 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 246586 29 100.0 32 ............................. CCTCGCCGTCATTCGACATTACGTTCACTCAC 246525 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 246464 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 246403 28 79.3 0 ...........C...A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTGGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //