Array 1 15121-16124 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGFN01000041.1 Escherichia coli strain OU-NP035 sequence041, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 15121 29 100.0 32 ............................. CCCCTTGACCTTAACGCCGCGTTTAGCGTCAC 15182 29 100.0 32 ............................. GGTATTTTCAGCAGATTAACCACCGCGATCGC 15243 29 100.0 32 ............................. ATTACATCCGGCAATATCATGCTGATGCCTCG 15304 29 100.0 32 ............................. GGCGGGCCGTTGGCTAAACGCTGCGATCTGCC 15365 29 100.0 32 ............................. GGACGCCCAGGAAAAGGACATTGCAGCGTCAT 15426 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 15487 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 15548 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 15609 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 15670 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 15731 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 15792 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 15852 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 15913 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 15974 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 16035 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 16096 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCAATTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 100-1043 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGFN01000006.1 Escherichia coli strain OU-NP035 sequence006, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 100 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 161 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 222 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 283 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 344 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 405 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 466 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 527 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 588 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 649 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 710 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 771 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 832 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 893 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 954 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 1015 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGAG # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //