Array 1 1-379 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRQK01000232.1 Acinetobacter baumannii strain 237 Abau237_S73_R1__paired__contig_246_consensus, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================== ================== 1 19 56.7 30 -----------.................AG CGGAAATCTTTTCAAGTGCGTAGGGGATAA 50 30 100.0 30 .............................. CTCCAAGTAAAGAATAAAACAATATACCGC 110 30 96.7 30 .............................C AAGGCGATCCACCTCCCGTCACAGTCATTT 170 30 93.3 30 ...........T.C................ TGCTAAAAGGATTTATGCTTTAAAATACTT 230 30 86.7 30 .......A.....C...T..........G. TGGCGTACGGATAACGGAAGAAAGCATAAG 290 30 86.7 30 .......A.........T..........AA ATAACCACGGTTGTGGTAAGTCACTTTTAC 350 30 80.0 0 .......A.A.....T.T..........GC | ========== ====== ====== ====== ============================== ============================== ================== 7 30 85.7 30 GTTCATGGCGGCATACGCCATTTAGAAATT # Left flank : | # Right flank : CGTTCAGGTTGAGGAGATGAAGTGATGTGATGTTTATGACGGTATACGTCACTTAAGCGTTAAGATAAAAAAACAAATGATCACTGCTTAGTATTCTTTATCTTTAAATTTTAAAGAAGAAAATATATTCTGAGCTCAAGATATTTAGTGGTGAAATTTTTATGCGCGGTTTATACCTCATTACCAATGATGACCCAATCCAATTATTATTAGAAAAATTAGACGCCGCACTCGCAACCCGTCAAATCGCAATTTTACAGTACCGCCGTAAAAAAGTAGACAAAGCCGACCAACCTGCTGAAGTTGAACAGATCAAACAATTATGTGAAAAATATCAGGTTCCTTTTGTCATTAATGATGACCTAAAACTGGCTGCTCAGTTTGGTTTAGGTGTGCATTTAGGTCAAAGCGATGGCGAAATCACCGATGCAAAATCGCAGTTACCAGAAGGTGTTATTATTGGCCGTACTTGCTTAAACTCATTAGAACTTGCCCAAAAA # Questionable array : NO Score: 3.39 # Score Detail : 1:0, 2:3, 3:0, 4:0.29, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.00%AT] # Reference repeat match prediction: F [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 680-50 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRQK01000221.1 Acinetobacter baumannii strain 237 Abau237_S73_R1__paired__contig_131_consensus, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 679 30 90.0 30 .C.........................C.G CGCCGTAGTTTTTTAAAAGTTTCCGTTTTG 619 30 93.3 29 ............................CC AAAGTTACTTGTTCAATATTTGTCTAATA 560 30 100.0 30 .............................. GGACAAAGATTATGACTGAGAAAGACGAGA 500 30 100.0 30 .............................. GGATGTGCAATTTGGTCAAGATGTGGGGAG 440 30 93.3 30 ............................CG AACACGACTTGAACCAAAGTTAGAAAAATA 380 30 93.3 30 ............................CA ACTAAAAGCTATTTATGGGGGTAAAAATTT 320 30 96.7 30 .............................G TCATTGGCCGGCCATTCACAACCCCGATAA 260 30 93.3 31 ............................CC AAAAAATGAGGAAATTGGACAATATCCAACA 199 30 96.7 30 .............................G TTGAACGAGTTATTCATAAGTGCCAGAAAT 139 30 100.0 30 .............................. ATAAAAGAACACTGATAATTGTTGAGAATA 79 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =============================== ================== 11 30 96.1 30 GTTCATGGCGGCATACGCCATTTAGAAATT # Left flank : CCAC # Right flank : TATTAATACTGCTTATAAACTTTCTTAAATCGTTCATGGCGGCATACGCC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 378-48 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRQK01000147.1 Acinetobacter baumannii strain 237 Abau237_S73_R1__paired__contig_132_consensus, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================== ================== 377 30 96.7 30 ............................T. GCTCATCAATACAGCTACAAGAAAATTTGT 317 30 96.7 30 .............................G CATAATCATAAAAATTATGTGTTAATATCT 257 30 100.0 30 .............................. GGGCCGCAACCATACGGTCTATGACTTCCA 197 30 93.3 30 ............................TC ATGATCATAGCCCTTATAGATATCGTATTT 137 30 96.7 30 ............................C. GCGAAAGCGGGGTTTTTTATTGCCTGAAAT 77 30 93.3 0 ............................GC | ========== ====== ====== ====== ============================== ============================== ================== 6 30 96.1 30 GTTCATGGCGGCATACGCCATTTAGAAAAT # Left flank : ACTTGTTGTTG # Right flank : CATAGGCATTTACTCCCGCTGTGAGTGAAGGGTTCATGGCGGCATACG # Questionable array : NO Score: 5.47 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAAAT # Alternate repeat : AGTTCATGGCGGCATACGCCATTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: R [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.80,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-11.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 623-53 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRQK01000146.1 Acinetobacter baumannii strain 237 Abau237_S73_R1__paired__contig_133_consensus, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 622 30 93.3 31 ............................CC AAAGCGTTAAGTACTCACGATTTGCATAATG 561 30 93.3 30 ............................AT CTGCAAGACCACTGATAGTTGTTGAGAATC 501 30 100.0 30 .............................. TGGCGTAGCGTTTCCAAAGTTGCCCATTGG 441 30 93.3 30 ............................CC AAGCGTGACCAACTCACCAGTTGTCACAGG 381 30 96.7 30 .............................T TTGAAACTTATAGGCTTGGCTTGGGTTATC 321 30 100.0 30 .............................. AAAGGGATTTAAAAGCAGTTACATAAAATT 261 30 100.0 30 .............................. AATTGGATTTCGTAAATCATTGAGCAAGTT 201 30 96.7 30 ............................A. CATCAAGTAGATCAGCAGTTACCTGTTCAG 141 30 96.7 29 .............................T ATTAAAGTGGCCTTATAGTGCTTTAAATA 82 30 96.7 0 .............................T | ========== ====== ====== ====== ============================== =============================== ================== 10 30 96.7 30 GTTCATGGCGGCATACGCCATTTAGAAATG # Left flank : GTTTT # Right flank : TATTAATACAGCTTATAAAGATTGTAATATTGTTCATGGCGGCATACGCCATT # Questionable array : NO Score: 5.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-6.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 202-52 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRQK01000359.1 Acinetobacter baumannii strain 237 Abau237_S73_R1__paired__contig_106_consensus, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================== ================== 201 30 96.7 30 .............................C ATCAAAGGCTTTGAGGGTAAGCGCCTTTGG 141 30 100.0 30 .............................. ATTAAAGAATTTTGATAGTTGTTGAGAATA 81 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ============================== ================== 3 30 98.9 30 GTTCATGGCGGCATACGCCATTTAGAAATT # Left flank : GGCAAATGGCTAGAACGATTCATTGATTATGTACATATCACTCAACCGAGAGAAGTGCCTCGAGCCAAGATTACAGGTTATGCGCATTACTATCGAGTTAATCATAGAATGAGTGTTGAGGAACGTATAGTTCATCAAGCACAACGTCGTAATATTTCTTTGGATCAGGCTAGACAGCATTTTAAACAATATGTTGAGCAACCAGTGGTTGAACCATACGTAAGTTTAAAAAGTCTCAGTGCAAAACGTGAGGAAAATGTAGATCGCCCCTATCGTTTATATATTGGTAAATCACTTGTTGATGAGGCAAGGGATGGGATGTTTGGAACTTATGGACTAAGCCGAATGACAACAGTCCCAGAGTTTTGACCCAATATTTTTTCTATTCTTTAACAGCTCAATAAAATCAATAAGTTACAATAGGTCTTTTTTGATTGGGTAAAATGCCAAAATCCATGATAAACACTTGTTGTAACTTATATTTTTACTATAATTTTATA # Right flank : TATTAATAAAGCTAGAAAGATGGAAATTTTGTTCATGGCGGCATACGCCATT # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.86%AT] # Reference repeat match prediction: R [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //