Array 1 112-379 **** Predicted by CRISPRDetect 2.4 *** >NZ_QTQU01000156.1 Burkholderia glumae strain Bp9029 BURSP-Bp9029-6001P2S1-EN-PRI-2017-064-DW_S65_332, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 112 28 100.0 32 ............................ ACCGTCTCGCCGTGGAAAGTGATCTTGTCATC 172 28 100.0 32 ............................ AGTTCACGGCGCACACGGCGCGCATTCGCAGA 232 28 100.0 32 ............................ TTCATAGGGCTCCCGAATGGTTAGGTTGCAGG 292 28 100.0 32 ............................ TGCGCCGGGGCTCGCTCGTTGTTCGCGAAACC 352 28 92.9 0 ..........................GG | ========== ====== ====== ====== ============================ ================================ ================== 5 28 98.6 32 GTTCGCTGCCGTGTAGGCAGCTTAGAAA # Left flank : GTTCTGATGCCCAAGGTTAACAGCTTGCCGAGGAAGTAAACAGCCCCTCTCGGGAGTTTTTGAACTGGCCTCTTAGAAATTGACGACTGCAAACGCGCCGGGCGCGAGCCAG # Right flank : CCAGTTCAAAAACTCCCGAGAGGGGCTGTTTACTTCCTCGGCAAGCTGTTAACCTTGGGCATCAGAA # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGTGCAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 619-351 **** Predicted by CRISPRDetect 2.4 *** >NZ_QTQU01000026.1 Burkholderia glumae strain Bp9029 BURSP-Bp9029-6001P2S1-EN-PRI-2017-064-DW_S65_202, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 618 28 100.0 32 ............................ GTAGGTTTCCTCGGGCTCCGTGGCGCCGCGCA 558 28 100.0 32 ............................ ATCAGCGCGAACTGTGGGCCGTGGCGGCTCGT 498 28 100.0 32 ............................ GCGCGCCGCGTCATCATGCGCCGCGACGGCGA 438 28 100.0 32 ............................ ACTGAGCGACGGGATCATGCGCTTCCACTGCC 378 28 92.9 0 ..........................GG | ========== ====== ====== ====== ============================ ================================ ================== 5 28 98.6 32 GTTTGCTGCCGGGTAGGCAGCTTAGAAA # Left flank : TTCCGAGGCGGTTTTCACCAGCGTGCGGAACGCCGCCGCGTCGAGCGGCTTCGGATTCTTCTTGTCGCGCCCCATCGTCCAGGGGCCGACCAGCGCCGGCTCTGCCTCGCCGTCCTTGATCATCGCGACGGCCCAGCCGTCGTCGTCCTCGTTCTTGATCACGCGCGCGGTCCAGCCGCTGTCGTGCCAGAGGCCGTCCTCGTGGATCGGGCTGTCGTCCTGGGCTGGGTCGGTATCGGTGGCGTGGTCGGTCATGAGGCGTCGGGCGCGGGTTCGGGGGCTTGGGTGGGCGGCTATTGTAAACGTTTCGATCGGCGGCAATGGTGCGCGCCGCCGCAGCTGGCCGTGCGGCCGGGTGGTGGCTGCTGAACCCTTTTTTCGGCAGAATGCGCGAGGGGCTGCAAAATCAATGGGTTAGCGAGAGGCGGGAAATTTGGGGTGTGCGAGGTGTCGGGCGGGAATTGGTTTTTGAATCAAGGGGGTAGGTGGGTTTTTGTTCA # Right flank : GCCAGTTCAAAAACCCTGCTCAGCTCGTCTGAAGATGTTCCAACAGATGAGCGAGCAGCCAAGTTTGAGGAATGCTTCGTGAATGTAGGCACGTCGCTCGAAGCGAGTGCGTAGGCGCCGGAAATTGTGGAGCCAGGAATGCGTACGTTCGACCACCCAACGATACTTGCCCAGACCACTGCCATGCTCGGTCCGGCGCTTGGCGATCACGGGCTTGATACCGCGTTCGCGCAACGCGCGACGATGTCGGGTGGAATCGTAGCCGCGATCGGCGTAGACGACGCCGGGCTTCTGAAGCGGTCGGCCACGAACGCCGCGAATGGGTGGAATCGCATCAACGAGCGGCAGCAA # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTGCCGGGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTGCTGCCGGATAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.00,-11.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //