Array 1 7478-11601 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGIZ01000031.1 Loigolactobacillus backii strain L101 scaffold31.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 7478 36 100.0 30 .................................... TTTCTTACTATTTTTATCTCTATTCCATCA 7544 36 100.0 30 .................................... GCAGTGCTGCGGCGCCTCAAACCATTTGAT 7610 36 100.0 29 .................................... GAATGTCTGGGTTCATCGTTTTTTAAAAA 7675 36 100.0 30 .................................... TATTTTACCTCCTGTGTTGTGTCTGTGTGT 7741 36 100.0 30 .................................... ATTGAACAATTAGATGAAATTTTACTGGCG 7807 36 100.0 30 .................................... TCTGGATCAACGTTCCGAAACAACAATCCA 7873 36 100.0 30 .................................... TGCTGAATTAAAGATTCTTTGATCTGGTCA 7939 36 100.0 30 .................................... AAAGATTTAGCGGCCAAAACGTTTAATATT 8005 36 100.0 30 .................................... ATAACCGTTGCGTTATACACCGTACCATTG 8071 36 100.0 30 .................................... ATGTTTTTGACAGTGATCGCATGGGTAACA 8137 36 100.0 30 .................................... TGCATTACCTCCATTTTTTGTTGTTCCTGT 8203 36 100.0 30 .................................... AGACTGCTCCAATGACAATGACCATTGTCC 8269 36 100.0 30 .................................... ACAGCCATGCAGAGCCTGATCCTTAAATAT 8335 36 100.0 30 .................................... TTAATTACGCGGTTAAGCAAAAGATCTTAG 8401 36 100.0 30 .................................... CCAGACGAAACGTATTTAACCCCGTTGCCG 8467 36 100.0 30 .................................... ACAACCTAGTCGTGACAAAGTAGTAGAAGC 8533 36 100.0 30 .................................... CTGAAAATACCTCACTAGACCTAATTTTTA 8599 36 100.0 30 .................................... TTTCAGTATCGCCTTGTTTGATTTGCTGAG 8665 36 100.0 30 .................................... TTAACCTGATAATAATAGTCAGCAAATCTT 8731 36 100.0 29 .................................... AGCGACGCTAAACAGGCTGTGGCTGATAA 8796 36 100.0 30 .................................... ATAAGGTTAGCGAGACCTTAGCATGGATAA 8862 36 100.0 30 .................................... TAGTGGATAAGACCAAGACCGAAGAATTAG 8928 36 100.0 30 .................................... CGCAATTCAAAGGCTCTTTGTCGGCGCTGT 8994 36 100.0 30 .................................... AAGTCTTTCAGTTTTGATGCCGGTGTCTGG 9060 36 100.0 30 .................................... CTAGGATAGGTATAAAAGCTGAACTAAAAA 9126 36 100.0 30 .................................... AGGAATTAGCATTGGAAATACTGCGGGCAT 9192 36 100.0 30 .................................... CTTACACGACCGCTTGAACGCTTGTGTTAG 9258 36 100.0 30 .................................... TCATCTCCTTCTACCCGATTGACCCCCATT 9324 36 100.0 30 .................................... CAATAGCAGAAAAGTATGAGCGATGTGGGA 9390 36 100.0 30 .................................... ACGCCTAGAACAGTACCCATTGCAGTACCA 9456 36 100.0 30 .................................... GTCTGACGTGCCGCGGTTTGGCTTTTCTGG 9522 36 100.0 30 .................................... CAGAGAAATTGATATAGCTCTTAGCTTCTT 9588 36 100.0 30 .................................... ACCAGACTTCTTCACCAGCAATTTTTGCGA 9654 36 100.0 30 .................................... TACGAAGCACCGCATAAAGCGGATGTGCTC 9720 36 100.0 30 .................................... CACCGGTTTGGCTTCACTCTTTAAAGACAA 9786 36 100.0 30 .................................... GATCGGACGCACTTTGTCTATTATGGATTT 9852 36 100.0 30 .................................... AGCCAAGAATAATAAAACGGAGGCGATATT 9918 36 100.0 30 .................................... CTGATATTTAGATTTTAGTAACTACACTTT 9984 36 100.0 30 .................................... GAGAGCGGCCACCGTTTGCGTGACATTATC 10050 36 100.0 30 .................................... TGTATTTTGCGGTGTGGTCATTTTTCATGA 10116 36 100.0 30 .................................... ATTATACGTTGAAAAATACAATAAGCAGAT 10182 36 100.0 30 .................................... CAACTTCTCTTGCCGATCAATTTGCTTTAA 10248 36 100.0 30 .................................... TAAAGTTGTCGGAAGTGCGTCCCACATCTG 10314 36 100.0 30 .................................... CAACTAGAATTGCATCCTTATCCACTGATG 10380 36 100.0 31 .................................... CCTCAACGGCTGATGGCATCAACGATTCATG 10447 36 100.0 29 .................................... CATTTCCGTCTAGCGAGATAATTGAGTGA 10512 36 100.0 30 .................................... GGATAATTTTTGCTTATCTCGTTCCTTGTT 10578 36 100.0 30 .................................... CAACTAGAATTGCATCCTTATCCACTGATG 10644 36 100.0 30 .................................... ACGAGAAGTTTTGCACCGCCGTGTTCGTGG 10710 36 100.0 30 .................................... GCTGTTCTGTGTACTTGCGCATAATGACCG 10776 36 100.0 30 .................................... ATGGTTCTGGATTTTAGTTGTCTTTATTGT 10842 36 100.0 30 .................................... CCTTGGTTAGCTCAATTTTCTTAGATACAT 10908 36 100.0 30 .................................... TACTGAACTAGTTAATCAATATAATAAAAA 10974 36 100.0 30 .................................... CTTTCAATGTAAGTCAATACCGATTTAGTG 11040 36 100.0 30 .................................... CACAATCATTACCATTACGATGCTCGCTGG 11106 36 100.0 30 .................................... TCTCTATACTGAGAAATAAATATGTCTTGA 11172 36 100.0 29 .................................... ACTCCTGGTTCAAACATTGAATACTATGT 11237 36 100.0 30 .................................... TCCACTCAGCCAGCTCATAATGATATGAGT 11303 36 100.0 30 .................................... GCCAACACGTAAGGCAATTAGTGGCGTTTG 11369 36 100.0 30 .................................... CAAAGGTAATCACAGGTATCGTTCGCTTAT 11435 36 100.0 29 .................................... CAAAAGCAATGATGAACCTTATATTTATA 11500 36 100.0 30 .................................... TGACCGTGTGTGTTATTTCTTCGTCAATTT 11566 36 97.2 0 .............C...................... | ========== ====== ====== ====== ==================================== =============================== ================== 63 36 100.0 30 GATCTATTTTAGCTGAAAACTGAAGGAATCAATAGC # Left flank : GATGAATTTCATTCGTTGAGTAACGCGGTTCATAAATTAGTTTCATCGTACACTACTTGTTGTCGTAATAACTCTGCCGCGGGATTAAAGTTGCCGGAACTTATCCCGTTGGTGGCACACGAGTATGAGTAGCAAATATATGCGCCTATTAGTTATGTTTGATTTACCAGTAGTAAAGGCAAAAGATCGTCGTGCAGCGGCAAAATTCCGGCAGTATTTATTGGGCGAAGGCTACGTTATGATGCAATACTCGGTTTATTATCGCATTGTAAATGGTTATGATATGTCAAAAAAATACGAGCTGCGGTTAGATGATAATTTGCCCGAAAAAGGGTCAGTAAGATTGTTGGTTATAACCGAAAAACAATTCGATGAAATGCGTCTGCTAGTAGGTGATCCACTGCCTAACGAAGAAAAAGTTGAAAGTGGGCAGATGACCACTTTTTAGACAAGCAAAAGAGCCTGATATCCGCGTGATATTAGGCTCTTTTGGTACACTG # Right flank : CTCAGCATAACATAGTAAGATATAAGGCTGGAAATTGTCTTCATAGTTGCGAATTATGTCGGGTTTTCAACGACTCGAATTTATACTAGGTTTCTAATATTTGCCTTTATGTGTTGACTTTTCTAAGCTTACTGACCTTCTTGGCGGATGGGAGGAAGCCTATTTTTAAATAGAGAGTGTCGGCTTTTATTGTGAAACCATCATATCAGCCATAACTACATATTTTTTTGTGCCAGTACCGGTGCCACTTGCTTCGTTTTCAGAAGCAAATTTAACATTGCAAATACCAATATTTCCTTGCTTTACTGCCAATGAACAAGCATTTTCAATAGTTTTTTGAAGGCTTTTACCCTCACTGAATACCACATTTCCTGTCGATTGATAACCTTCTAATGCCTGACCCATTGTGATTAAAGTTTTGTTTGAATTGTTATTAAATAATCCCATGATATTAACTCCTTAATTTACATTCATTTTTGTGTTTAAGATATTTGTCTTGG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCTATTTTAGCTGAAAACTGAAGGAATCAATAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 67081-67495 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGIZ01000005.1 Loigolactobacillus backii strain L101 scaffold5.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================================================================== ================== 67081 31 80.6 35 .A....A..C...AG.G.............. CTAAAACTCATCAGAAATACTTTCATGGTTAAACT CC [67099] 67149 31 100.0 35 ............................... CTAAAACTCATAAACTTTAGAATTATGCCTAATAA 67215 31 100.0 85 ............................... TGGATTTAGGTCAAGAATCTGGACACATTTTATGTATAATTTAAGCGACTAATTTTTCCTTTTCATTTGGAGTTAAATAATCAAN 67331 31 80.6 35 .A....A..C...AG.G.............. CTAAAACTCATCAGAAATACTTTCATGGTTAAACT CC [67349] 67399 31 100.0 35 ............................... CTAAAACTCATAAACTTTAGAATTATGCCTAATAA 67465 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================================================================== ================== 6 31 93.5 45 TGGGGTTTAACCTTATTGATTTAACATCCTT # Left flank : ATATTTATCCTGCTGCTTAGCTAAGGCAATCCCTTGCTGCTGGCGCTCAATGATTCGCTTACGTTCACTTTCGGCCTGATACTTATAGAGTTCAATAATCAAGTTGGTCATCAGTTGACGTAAATTTGGGTCAGCAATCCCTGTCATGGACGGTAAATTCAACACATCTAGGGTGGCACCTTTATTTTGAATGGTGTTCATGATTTTAGTTAAGTCCTGGTTGTTTCTGCCTAAGCGATCTAATTCAGTGACCATTACAATATCACCCTCACGAATATAGGCCAGCATTTTTTGCAGTTCTGGCCGATTAGTGTTAGCTCCACTTAATTTATCCGTAAATAATTTATCAACGTCTTTTAAAGCCGCTAATTGTCGATCTAAATGTTGCTCTCTGGAACTCACGCGCGCATAACCGATTTTAGCCATTTCAAATTCTCCTTTTGGACAGTTCTAATGAACATTTGTAATTCCTAGTATAGCACAGAAACAAAAAAGGCCAC # Right flank : TTGGATTTAGGTCAAGAATCTGGACACATTTTATGTATAATTTAAGCGACTAATTTTTCCTTTTCATTTGGAGTTAAATAATCAATGCTACTGTGAATTCGAGCACTGTTATAAAAGCTCTCAATGTAGCTGAATATTGCAGCATTTGCTTCTTCAAAATCCTGATAATGGTGTTGGTAAACCTCTTCTTTTTTCAAACTGGCGTGAAATGATTCCAAACATGAATTGTCATAGGGACAGCCACGCTTGCTATAAGAATGGCGAATATGGTGTTGCGCTAAGATCTGTTCAAAGCCAGCACTGCGGTACTGGCTACCCAGATCGGTATGCACAATTAAGTTATTAGTCGTCTTTCTAGTTTCAAAGGCTTGTTGAAAAGTGCTGATCACAAGATCAGCAGTCATATGACGGCTGATTTTATGGGCAATGATTTTACGTGAATATAAATCCTGAATGCTTGATAAATAACACCAGCCATTGGCTTTGGTGTGAATATAAGT # Questionable array : NO Score: 4.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:-0.92, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGGGGTTTAACCTTATTGATTTAACATCCTT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.74%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [8-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //