Array 1 123793-121210 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV810815.1 Neisseria sp. HMSC067G11 Scaffold195, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 123792 33 97.0 32 C................................ AAAGTCGCCCTGACCAACGAAGCAGGCGAGCC 123727 33 97.0 33 G................................ ATGAACCCTGTCGAATTGGCGGCCAATACGTTC 123661 33 93.9 35 AG............................... TGCCTGTACGTTTTCAAAAGTGGCTTTTCGGTACT 123593 33 93.9 33 GG............................... GCCGTTATCGTCGCCAGCGGTGGCAGAATCGCC 123527 33 100.0 32 ................................. AGCCATGCCCGAATCTGCCTAAACTTGAGGGC 123462 33 93.9 32 GG............................... TCGCCGGTGGGCTGGGCATTTTTCGGGATAGG 123397 33 100.0 31 ................................. CAGCGTATGGCCGTCAAAAGCTCGCAAAATG 123333 33 100.0 31 ................................. TCATTTTCATTTGGAATTTGGGCTTCTTATC 123269 33 93.9 32 GA............................... AGAACGTGATTGTTGATATTCAGCCTGTGCTG 123204 33 93.9 32 AA............................... ATGGTCTTTCTTCTGTTCTTTCGGGGCTTCCG 123139 33 97.0 33 C................................ TTGCCCAACCGTCCACGCCGACAACGGGCGTAA 123073 33 97.0 33 .A............................... TCGGGGTGTTTGTACTGCCGATGACTGCCTCGG 123007 33 97.0 33 G................................ GGGAAGAGAAAGAAAGGATTCGATATGTGCAAG 122941 33 100.0 34 ................................. ACCATTGGTTTGCCAGTTCGTCGATTTTGCTTAC 122874 33 97.0 32 .C............................... ACTGGGGATATTTATCATATTGATGGTGCAGA 122809 33 97.0 33 A................................ TTGAGAAACGTCATCCACCTGTTCTCTAATGCA 122743 33 93.9 32 GG............................... GTCAAATCAGGCTTAAAGTAGCCTTCCGCTTT 122678 33 93.9 31 GG............................... TTGTTGTGTTTCGCGGTTGTATTCTTTAACC 122614 33 97.0 33 .G............................... ACGCTTCGCCTCTTCGACGCTGTCAGCAAATAC 122548 33 93.9 33 GG............................... AAGCCCCAGAAACGCCTAAAGAAGTAAAAGCAG 122482 33 93.9 33 AC............................... GCCAAACTATCACAATAAGCGAACGTGGTTCAA 122416 33 93.9 32 AC............................... AGGCGATTGCCGAAGAATACTTTGCGACCAAG 122351 33 93.9 32 AC............................... CATCCCGTCAAATTGCGGATGGCTATTGATAA 122286 33 100.0 31 ................................. CCATTGACATCAATCCTTTCGATTGTGTGAT 122222 33 100.0 33 ................................. TTCATTTTGTTGGCAGGTATTCTCCAAATTCCT 122156 33 93.9 32 GA............................... AATATCAATTTCCGCTTCAAACGGTAAAGGGA 122091 33 97.0 32 .A............................... TTTTGCTTTGTCATATACTCGCGCATAACATG 122026 33 93.9 32 AC............................... GGGTCGGCTCTACTTGCCAGCGTTGAGATAAA 121961 33 93.9 32 GC............................... ACATTTACCGCCTAGATAGGCGGTTTTCTTTT 121896 33 97.0 32 G................................ AAGACATAAGGCCATGCGGTCGGAGGTGTCTT 121831 33 97.0 32 .G............................... CCGCCAAGGGTACTCACGTTATGAGTACCCTT 121766 33 100.0 31 ................................. AGCCGTCGCCTCTTGGTTTTTGATGTAACCA 121702 33 97.0 32 A................................ TTGCGTCCTGCGTTCTTTTTGAGAATTAGCGC 121637 33 97.0 31 G................................ GCTAAATCGGGCTTAAAGTAGCCGTCTGCCT 121573 33 97.0 32 .G............................... GTCCATTCCCCAATCGGGGCGGCTTGTTTCGT 121508 33 93.9 32 AA............................... GTGATTCTCGCTTCCCAATTTCAGACGGCCTG 121443 33 97.0 32 .C............................... ATTGCCGTCTGCTTTGCTTTGCACTGTCGTGA 121378 33 97.0 33 .C............................... CAATCGCCACGCAACATCATGACATTGCCCACG 121312 33 97.0 37 .C............................... GCAGTGTTTTGGCCGTGTCAGCAATCACTATCGCGGC 121242 33 97.0 0 .C............................... | ========== ====== ====== ====== ================================= ===================================== ================== 40 33 96.4 32 TTCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : CTGCACATGGGAATACAAAATGCTGATGCTGATTACTTACGATATTTCGCTGGAAGATGCGGAAGGACAGGCAAGGCTGCGGCGCGTGGCAAAATTGTGTTTGGACTACGGCGTGCGCGTACAGTATTCGGTGTTCGAATGCGACATCGCGCCCGATCAATGGGTTGTTTTAAAAGACAAACTCTTAAAAACCTACAACCCCGAAACCGACAGTCTGCGCTTTTACCATCTGGGCAGTAAATGGCGGCGCAAAGTGGAACACCACGGCGCAAAACCGGCGGTGGATGTGTTTAAGGATACGTTGATTGTGTAAATCGCCAACCTGCGGTTCTCATGAAAATGCGGCAGGGTTGGCGAATTGGGATTGTTCTTTAATAATCAGGATATTGCGAATGCGGGCGTAACGGAAAAGGCTGTGTTATACTCGCGTTCACGCTTTTCTTAGGAGCTTAGCGAAATCGGGGCTGCGAAACCTGATGGAACAAGGCTTTTAAGAGAGG # Right flank : CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCAGCAAAACCCTCTACTCGCTGCCTTTACCGGCCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTCTGCCACCGTATCTCATGTCTAAGTAAGGAAGAGGGGCTGTATGTTCAAATATTGTCCAAGCAGACCGCTCTTCTTTTGATCCTTCGCTTTCCGAAGCTTTAGTGAAAGCTGTGAAGGATATTAGAAGCAAGTCATAAAGGGTAATCAATAACAATGCTGTCTGAAAAAGTTTCAGACAGCATTTTTTCTATTTGCATATTAAATTTAATATCATATTATCATTGCATAATATCAGTTTAAATTTTTTAGAATTTCAATATGAAAACCCTAATTTACTACGCCCATTCTGCCCAAGACAAAC # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.22, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.00,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //