Array 1 703784-702499 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020882.1 Xanthomonas citri pv. citri strain TX160042 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 703783 31 100.0 36 ............................... TCGAGCGCATCGATGACGGTCACCCATCCCCCAATG 703716 31 100.0 36 ............................... GTGCCACCGACAGCGACGCACGTGGACCTGCAGATC 703649 31 100.0 34 ............................... CTCTCTCACGCCGCGCGTGCGAGATCCTGCGTGC 703584 31 100.0 36 ............................... GCAGACTGCCGAGGCCGGCATGCTGGAGGGGCGCCT 703517 31 100.0 37 ............................... GGGTTAACAACGCCTTGAAACGGCTTTGCCGCGACGC 703449 31 100.0 36 ............................... ACGTCTTGGACCTGGGTGTGGTTGCTGAGATAGTCA 703382 31 100.0 35 ............................... GCCATCATGCTTTGAATGCGCTTACCCACGGCGAA 703316 31 100.0 35 ............................... GCGGATATGTGATTAGACCCTTTTACGACTTTCAG 703250 31 100.0 35 ............................... ATGTCGAAAACGATGGCCTTGACGTCATCGTCTGC 703184 31 100.0 34 ............................... TTCGCTGGCATCGGTGGATGGAGCCTTGCGCTTC 703119 31 100.0 34 ............................... TCATTGAACCCAAGGACCACTTCGCAGGGCGACT 703054 31 100.0 34 ............................... TTGACCACATGTTCTCTCTGTGGGAGGAAGGCAC 702989 31 100.0 34 ............................... TGTCGAGCGCGCACTGCTGCCGCGATGGCCGGAA 702924 31 100.0 34 ............................... GGCTGGGAGCGTTACAAGTTTGAGCAGCCCGTAG 702859 31 100.0 35 ............................... TGGTTCAGGGCTGGAAAGACTTGGATGCCCGCATC 702793 31 100.0 34 ............................... CTGACTATCCCTGCATAGGCCACGACCTGCGAGG 702728 31 100.0 36 ............................... AAGAAGACCAGTCTGCGGCGTCGCGGCATCCTGGGG 702661 31 100.0 34 ............................... CTGAGTTCGTCGCCGTCCCGGTCGTCTGACGCGT 702596 31 93.5 36 T...........T.................. CATGCCATATGCGGCGAGATCGCACAGCAGAAGGAA 702529 31 96.8 0 .G............................. | ========== ====== ====== ====== =============================== ===================================== ================== 20 31 99.5 35 GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Left flank : CAAGGACTACTTCAACCGCGCGGTACTCGGGCCGAAGCTGCTGGTGGTCGATGAGATCGGCTACCTGCCGTTCGGGCGCGATGAGGCCAACCTGTTCTTCAACGTCGTGGCCAAGCGCTACGAACGCGGCTCGATGGTGCTCACCAGCAACCTGCCGTTCACGCAGTGGCACAGCGCCTTCGCCGACGACCAGACGCTCACAGCGGCGATGCTCGACCGTCTGCTGCACCATGCCCACATCGTGCAGATCGGCGGAGAGAGCTACCGGTTGAAGGACAAACGCAAGGCCGGGCAAACGGCCGCGAGGGTGACGGCGACGGCATGACCGAGGCAACGCGGTTCGGCTGTCTTGGCCCCGGCCCTGAGCAGTCGAACCGCGCAACGAACAAGACCCCGGGTGGGTCAGATTTACTTCGGCGATCCAACGAAAAGTGGGTCAGATTTAAATCGGCGTTGACATGAAACCGCTGCACGGATGCGCCAGGCGGCGAGGCGATCAT # Right flank : AATTTAAACTCGCCCCGCCAGCCGGACGCTGACGAGGTGCAGGTTGGACATGCTTGAGGCCTGCGTATGGCAAAGATCAATACGCACGCAGATCAAAAATTGGGCTCCGTCCATCAACGCTTGAGAACCATTATTTGACGATGATGGTCTGAGGCGTGCCTGCAGGCTTGCCGTCCACCATGACCTGCGCGGTGTAGGTGCCGGCCGGCCAGCCATCGGGCTTGCTGAAGCTCAGGTTGGTGGTTTCGGCACCGGTGGTGTTCAACGTCGCGTTCTGTTCGCCAGCCACCTGGCCATCCTGGTAGGTCAGCTTTGCCGACACGGCCACGTTGCTCGCGCTGCCGTCCGTCTTGACCGAGACGATGATGGTGTCTTTGCTGCCGACACTGGTCGCCGGGGTCACCGTCTTGTCGGCTGCGGCCTGGGTGCCGACGGCCACACTGGACACCGTCACTGCGCTACCCGTGGCAGCACCGCCATCGGTGCTGGCCGCACCGGTT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 706068-705838 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020882.1 Xanthomonas citri pv. citri strain TX160042 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 706067 31 100.0 37 ............................... AAATGCTTTCGACGCGCATAAAGCGCTGGCGCAGGAG 705999 31 100.0 35 ............................... CTGTTCAAGCTCCGCCGCCTGATCCGCTTGCCGAG 705933 31 100.0 34 ............................... CTCGGGTTTCGGGATGTGCTTCAGATCTGCGTCG 705868 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 4 31 100.0 36 GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Left flank : TGACGCGGCTCAAGTCCCATGATGATTCTTGTAAGCTAGGACGTCAGCACCAGCTCTCCCGGGGGCCAGAAGCGCCTGCGCAAGGTCGCCAAAGCCTGCCGGGACCGTGGCCAGCGCGTGCAGTTCTCGGTCTTCGAGATCGAAGTCGAGCCTGCCCAATGGACTGAATTACGGCAGCAGCTATGCGACCTGATCGACCCGGCCCTGGACAGCCTACGGTTCTATCACCTTGGCGCGAAATGGGAGACCCGCGTGGAGCACATCGGCGCCAAGCCCAGCCTGAACCTCAAAGGCCCACTGATTTTTTGACGCGAACCCCAAGCGCCCCATAAAAACCGGGCAGGTTCGCAGTCTCCTCAAGCAACTGATTTGCAAAAAAAAAAATAAATACATAGCGGATTCACGGGGTCCGCATGACGACTTCTCGACTGCTTTTTTCAGCAAGTCCGCGCAATTGCCCGTGTTTTAGCAACGATGGCAAACACTTATGCTAAGGGGGG # Right flank : TGTTAGCGCCGATGTAAAACTGACCCACAGCGCCGAAGTAAAAGTGACCCACCTGGGCCACGATGGTGGCCTTTTGAAGGCTGCTGATGTTGACTCAGGAGCAGGCAGTGGAGATACGTGTGATGGCCCGCAGGGGCGAGAGTGTCAGAGCGATCGCGAAGCAATTGGAGTGCTCGCGCAACACCGTGCGCAGGTACCTGCGCGATCAAGATGCGCGGCGGTACGGCCCGCGCGAGTCCAGGGCCTGCAAGCTCGACGGCTACCAGTCCTATCTGCGTGAGCGCGTCGTGCAGGCGCATCCGCGCTGGATCCCGGCGACCGTGCTGTTGCGCGAGATCCAGGGGCGCGGCTACACGGGCGGCATCAGCCAGCTCAAGGCCTTCCTGGCCCCGCTCAAGCAGTCCGAGCCCGAGCCGCTGGTGCGCTTCGAGACGCCCCCGGGTCAGCAGATGCAGGTGGATTTCACTTACGTGCGCCGGGGGCGCGATCCGCTGCTGGCG # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.20,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //