Array 1 214595-216205 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQLL01000001.1 Neisseria lactamica strain M37101 M37101_CHA4301A21_cleaned_ctg_2882, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 214595 32 100.0 34 ................................ TCGTGCAGTTGGGTCAGCGGGTTGATGCCTGCCG 214661 32 100.0 34 ................................ GTCATAATAAAGTTATTGACAGGGTGAGTTTAAA 214727 32 100.0 34 ................................ AAAGCCAGTGTCGGTGCAACAGCAGCGGCAACAG 214793 32 100.0 34 ................................ GCCCAATTTTTGGGCGAACAGGACAAAGCCTTAA 214859 32 100.0 35 ................................ GTCCTCCATACGGGACGGCGGCGTGCGCGTCAAAA 214926 32 100.0 34 ................................ CAAATATGCCAGGCGAGCATGATATGGAACATCA 214992 32 100.0 33 ................................ TTTAGCCTGTCTTACCTTCTCCCAAAGAGCTAT 215057 32 96.9 34 .......................C........ TCTTGTTCTTATTGGAGAATTTTCAAAAAATCAG 215123 32 100.0 34 ................................ AGTACCTTTAGGGATTTGTTTTTATTTCGCTCCC 215189 32 100.0 34 ................................ AAATCGGGGGCGGGGTCGGTGTTGGGGCGCGTGC 215255 32 100.0 33 ................................ AGCGGCAAACCGAAAGTTTCATACTCTTTCGCG 215320 32 100.0 33 ................................ AGATTATAGGGGGCATAAATTCAAGTCGGTTAA 215385 32 100.0 33 ................................ TTGACATATCGGATTTAAATTTAAAAGACCCTG 215450 32 100.0 33 ................................ GACGCATCCCGCGTCGTCCCCACCGCCGACGAA 215515 32 100.0 33 ................................ CAAGACTGGATATTTGAAGAGGTTATCCCTCAA 215580 32 100.0 34 ................................ AATAGATACAATCGAGCATCGGGGCGACGCATAA 215646 32 100.0 33 ................................ CTGGGCATTAACCTCCACTATCTACCAATCAAG 215711 32 100.0 35 ................................ TGTACCCCCCCTGTTAGATAAGGGGGGAAGATTTG 215778 32 100.0 35 ................................ TGTACCCCCCCTGTTAGATAAGGGGGGAAGATTTG 215845 32 100.0 33 ................................ AGAACAACAAAGGAGGATTTGAACAATTAATAA 215910 32 100.0 34 ................................ TCTCAATTGACTTGCCGCTTGTGGATATGCGGTC 215976 32 100.0 35 ................................ CGAAAACGGTATTAAAAACTATGTCTGCTACGGAG 216043 32 100.0 34 ................................ CAGATTGGAAGTGCCTTAGGTTATAAAAATCCAT 216109 32 100.0 33 ................................ ATTAAAAAACTTTTTTCGCGGTATGCTTCGGGT 216174 32 93.8 0 ......................A.A....... | ========== ====== ====== ====== ================================ =================================== ================== 25 32 99.6 34 TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC # Left flank : CATGGAGGGACAAGAAAATGCTGATGTTGATAACTTATGATATTTCGTTGGAAAATGCCGAAGGGCAGGCAAGGCTGCGGCGCGTAGCGAAACTGTGCCAAGACTACGGCGTGCGCGTGCAGTATTCCGTGTTCGAATGCGACATCGCACCCGACCAATGGGTAGTTTTAAAAGACAAACTTTTAAAAACCTACAACCCCGAAACAGACAGCCTGCGCTTTTACCACCTGGGCAGCAAATGGCGGCGCAAAGTGGAGCATCACGGCGCAAAACCGGCGGTCGATATATTTAAGGACACGCTGATTGTGTGAATCGCCAACCTGTTGTTCCCATAAAAATGCGGCAGGGTTGGCGAATCTGGGTTGTTCTTTAACAATCAGGATATTGCAAATGTGGATATGGCGGATAAGGCTGTGCTATACTCATGTTTGTGCTTTTTTCGGGAGTTTGGCGAAGTCGGGGCTGCGAAGCCTGATGTAGTAAGGCTTTCGGAAGAGGCT # Right flank : CGGCGCGGACGACATCTGTTTCCTGCGCGAGTAGGGTAAAGGACAATCTAAATTCCCCCGGCAGCTTAAAATCTTGCCGGGTCTGCACAAAAATGCCGTCTGAACAGGTTTCAGACGGCATTTTGTTTCAATCGGGAATATCTTTGTTAAAAAACGGCTTGATGTTATCTGCACATATTAATATAATGATAATTATTATTAATCAAATATGGAAAATAGTAGGGATGTGTAAACCGAATTATGGCGGCATCGCCTTATTGCCCTTACTTTTGGCATCTTGTATCGGCGGCAATTTCGGCGTGCAGCCTGTTGCCGAACCAACGCCGACCGCGCAAACCCCGTCAGATTCCAAACCGTCCAAACCTGAGGACGTTCCCACTCCGCCTCCTGCCAAACCCTCTATAGAAACCACGCCGGTCAATCAACCCGCCGTCGGTGCGGCAATGCGGCTGCCAAGGCGGAATATTGCTTTTTATAACAAAGACGGTACAGAAATTCCC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.90,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 198418-198981 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQLL01000003.1 Neisseria lactamica strain M37101 M37101_CHA4301A21_cleaned_ctg_2886, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 198418 36 100.0 30 .................................... ATTACTAAATTTACCAAGCTGCTGGTCGAG 198484 36 100.0 30 .................................... TCTTTTTTTTCTTCTTCGGGCATCTCTCCG 198550 36 100.0 30 .................................... CATCGCCGGCGGAAAAATCAAATTAAGCCT 198616 36 100.0 30 .................................... CGCAGCCGTAGGCAGGCTGTTTCAGCGGTA 198682 36 100.0 30 .................................... TACAAATCTTTCTGGACGTCCTCCCCCTGC 198748 36 100.0 30 .................................... ATTTGCAAGCTAACCTGACCACAATCAAAA 198814 36 100.0 30 .................................... GCGAATTAACATCATAAAGTCATTGACAAG 198880 36 100.0 30 .................................... AAATTCAATCTGACGCAATTCTAGACGCAC 198946 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 9 36 100.0 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : TTTATTTTCAATTTTATGTTGAACTTTAAAGCAGTTTCGCAGTGCTGAAATTCCGCCCGAGCCCTTAAACCATACACGGCAGATGCCGTTCACAAAGGCGATGTGCAACTTTGCCCGAAACAGTCCGCCTTTACCCTTACAAGGACGAACAGCAAAAGACGGAACAGCCCGTACAGTCCGCGAAAGCGGAAAAACCCCAAGTTTTAGCAATGGATGCGGCAAAATAGAAAACCGCCCTTAATCGGGCGGTTTTGGCGGTCTATTGACTTAAAAGCACAATCAAGGCTAGAATAACCCCAGCATCAATCGTAACAGTCAATTGCAAAGTACCTACGCTAATAGAGATTTGCATTTTGATGTTTCCTGTGAAGTTTCAAAACTTGGCAGGAATGCAAAAATCCCCTTGTTCTCAGCTTGGGGATTTTTGTTTGTCCCCGCCGATTTTTTAAAATCCGCGCCTCTCGCGCCTGAACCTATCTCATAAAGTTCCTTATATATTA # Right flank : TACCCCAACGGGAAATCCTTATTATGTAAGGGTTTCCCGTTTTATTTGTTCTGAAAAAATGGGCTTAAAATAATAATAGTTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGCAGGTTTGCACACAGCCTGTTGTGGTGTTTTTGCAACGAATCTCGGCCTTTGACGATACGGCTGTATACGGAAAGCTGGAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATCGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACACCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA //