Array 1 391716-389955 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021848.1 Thermococcus sp. 5-4 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 391715 30 100.0 38 .............................. TGAGCGGGACGAGAATAGTGACGTTCGAGACGTCGGGT 391647 30 100.0 37 .............................. TGGAGTTCAACGTTCCGGTTAATGCTCTGAACGGCTA 391580 30 100.0 36 .............................. CTTCTCATTAGGAATCACCGAATTATCACTTATTCA 391514 30 100.0 37 .............................. CCTCAGAACCAACGCCCATGACCTGGAACCACGTAAA 391447 30 100.0 38 .............................. CTCAGATTACACAATCATCATGTTTGCGAAAGCGAATA 391379 30 100.0 36 .............................. TCATCGTCGTAAAACCTTAAGTCCGCTCCCTTCCTA 391313 30 100.0 37 .............................. TAACCGGAACTACTGAAACGCTCAACGTCGCCAAAAG 391246 30 100.0 37 .............................. CTATACGCCTAAGCTTTTCTTTGATTGAATCTCTCAC 391179 30 100.0 36 .............................. CACAAACCAGAGGCCGTTCTCATTCGCCACCAGGCC 391113 30 100.0 37 .............................. CCCATTTGATGTGATAGTGGACGACCTCAATCTTCGG 391046 30 100.0 38 .............................. TCAGACGACCCCTCCCCCGTGAAAAAGCCGAAATCAAA 390978 30 100.0 35 .............................. GATATTGCAAGAGGACGTACGGCTTTAACACTCAC 390913 30 100.0 36 .............................. ACGTCTCGGCGTGGCCTGGGGAGGGCCTATTTAACA 390847 30 100.0 37 .............................. CAAAATCGCAAGTGCGGTTAAATCCGACGGCTTGTAA 390780 30 100.0 37 .............................. AGGGGGTGGGCGCATGATCCTCCGCAGCCCGCTCGAG 390713 30 100.0 36 .............................. AAACACATTCTCTAAACTGAGGGTATCAGAATTCTC 390647 30 100.0 37 .............................. TAAAGCTGTGCCCCTCATAAGGCCCAAAGCTATAGCT 390580 30 100.0 36 .............................. GGTGCTCAAGAGTTTTGGCCTTCTCGAGGACCAGGG 390514 30 100.0 36 .............................. AATCTTCCAATCACTTCACCTCCTCCTTTTGTTCGG 390448 30 100.0 36 .............................. CGTAAAGTGGACATAGATATAATAGATATTTAACCG 390382 30 100.0 38 .............................. CAGGAACGAGAGCGCCCATTCCCCACCTTCGAGCTGAA 390314 30 100.0 36 .............................. AGGGGTTCACGAGCTCCACCTGCTCCCAAGGGACTA 390248 30 100.0 36 .............................. GGAAAGCAAACAGGCCCAGCAGCAGACCACCTAGCC 390182 30 100.0 37 .............................. CTTCGGAAGCGAGCTCACGAAGCAGGACTGGGAGGAG 390115 30 100.0 33 .............................. CCGGGACAAAATGAACGGATGTCTAAAATGCAG 390052 30 100.0 38 .............................. CGTGGCTGGCACTCAAAGCCATGGAGGACGTTCCGGAG 389984 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 27 30 100.0 37 GTTGCAATAAGACTTTAGGAGAATTGAAAG # Left flank : GTAATCAACGCTTTTAGGGGTTGCGATTGTGCGTTATCACGTTTAAACGGCCAAAATTCGTCAGAGATTAACGGTCGAGGTTTGTATTCAGGAACACCGCCGGATCAGCACTCGGGAAGTCTTAAATAACCTCCAGTTAGTGTGTACCACTTGGTTGCTTATTTTCCTGACAATATAACGAAATTTTTTCAGGATGTGCGGAGAAGGCATGACGACCCTCGAAATTGCCAATACTTTGACAAAATAAAGCATTTGGTTCCTTGTAGCTGTGTACCCCTAAATTTCAAAATATAGGGCAGCATAACAGCTCTGGAACTTACAGACGGAAGGAACAATTCCACCAGGGAAGCCCATCTCCTTCTCCGTAGAGCCATTAAACTCCAAAATGAAGTCCGACTCAGAGACCTCGGGAGACTCTCCAAAGCCCCCTCCGAAGAAAGGCTTATAAAAATAAATGCATCTTATTCCTTTATAGGGCAAAAGAAAGTGAAAGCTGCCCT # Right flank : TATTGGGTCACGATAGCTGACGTCAAGGACGGTGAGACAGTTGCAGTAAGAAGAACAAAAAGCGAAAACAACTCCGTTAGGATCACACTTCCCGCGCCAGCTCCATCTCCGTGACCCGCTCAAAAACGGTCTTGTGGTTTCCGAAGGCCTCGAACATTCTATCAGAATAGTTGGTGGACGCCGTTTCGAGGAACAGCCGGAGGTTTCTGCTTATTTCATCGTTCATTGGAACGTGAAGTGGCATCGGGTCGTAGTAATCGAGTCCCTTCATGAGGGCGGTTGAGAAGTACCAGAGCGTCTTCCTGACCTTCCTGCCCTTTATCCTGGAGAAGCTCGCCTCCATGCAGTTGAAGGCCGCGTGAAGGAGAACTATCATGTCTATCTCCACGCCCCGCCTGAGGAGCCTCTCCCTCTCCGAGTCCCTCCCGAGGTCCTTTATCCTGTAACCGCTTCTCGTCTGCTCGTCGTAGGGCACCTCGATGTCGTAGATGCCCTCCACC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTTTAGGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA // Array 2 1100547-1097842 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021848.1 Thermococcus sp. 5-4 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================ ================== 1100546 30 100.0 37 .............................. TGTATTTAGAGCGGGAAACGTAGGACTTGAATTTTAC 1100479 30 100.0 35 .............................. TGTAATAAATCTGGGCGTCGTGAGTCCAAAGCTGA 1100414 30 100.0 35 .............................. CCGAGCCACTTTCCGAAGATTCTCGTGACATTCAT 1100349 30 100.0 36 .............................. TCGCTAGCTTCTCTTCCTGCCTCTTCCTGAGTGCCT 1100283 30 100.0 37 .............................. GGCTCTGGGTTATCCTGATGTGGGCCTGATCCTGGAA 1100216 30 100.0 37 .............................. TGATGATGCAGTTGCAACGAACGTTCAAGTTTGGAAG 1100149 30 100.0 38 .............................. TATGCCACTCTGTTACTGCCGAATAGCGGCTGTGGCGA 1100081 30 100.0 37 .............................. GAGCTAACATAATCCGTATCAGTCACATAGAGCACAG 1100014 30 100.0 37 .............................. AGAACCCTGAGGTCATCAAGGAGGCCAAAAAATCAAA 1099947 30 100.0 38 .............................. TAACGCATAAGCGGGTCTTTACTCTTACGGCCTCCCTT 1099879 30 100.0 38 .............................. AAGAACCCGCCGAATAGTGCTTCCATGAGAAAGTAGTA 1099811 30 100.0 37 .............................. TGCTGAGATCTGGGAGAATGCTAACGGTCAATTGAAT 1099744 30 100.0 37 .............................. CGGAGGGTGATGGGTATGGTGATAAGCGTTCTCCAGA 1099677 30 100.0 36 .............................. TACTGCCTGCTATTGGGGGTGTTTGAGAAATGAAGG 1099611 30 100.0 36 .............................. TACTAATGTGAGTTTTTGCTATAAATAGTTTTCGGC 1099545 30 100.0 37 .............................. AATAACCATAAGTCAACGTCTAAACGACCTTACCTCA 1099478 30 100.0 44 .............................. TATTCTGAACAAACACATAGCAGGTGCTGGTGTTGCTATCCCAC 1099404 30 100.0 38 .............................. CGTCGTAACCGGACCCGCCCGAGACGGGGAGGGCCGCG 1099336 30 100.0 38 .............................. TAATGCTCTGATAGAAGAGGGCAAGGTGAGGAGGGTCT 1099268 30 100.0 37 .............................. TATTTTTCCTCAGGTAGCGCCTCACCCGGTTTGGGTG 1099201 30 100.0 38 .............................. CGTGTAGTATGCCAACAAGCCAACCCACGCCCAAGTCC 1099133 30 100.0 37 .............................. ATAGAAAAGCTATACTGACAAAGACCGCACAACCTTC 1099066 30 100.0 37 .............................. TCTTTTTAGTCGCGACCTCGGCGAGGTCCCTCTTTAT 1098999 30 100.0 35 .............................. TCATGTTCTTAAGGACCTTCATCAGGGCTGAGGGC 1098934 30 100.0 36 .............................. GAAATCGTCAGTAATCTGTGGGCTTAGTGGGCTGAA 1098868 30 100.0 35 .............................. ATTAAAACCGAGGCTGCTTATAATGCCTATCTCAG 1098803 30 100.0 35 .............................. TGTAATAAATCTGGGCGTCGTGAGTCCAAAGCTGA 1098738 30 100.0 35 .............................. CCGAGCCACTTTCCGAAGATTCTCGTGACATTCAT 1098673 30 100.0 36 .............................. CGCATATCGAACGATATTCTAAACGCTTTTGACGTA 1098607 30 100.0 38 .............................. TGAGAGTTAAGGCTTTGATAACCTCAGCCCTCGGAGAG 1098539 30 100.0 36 .............................. GAAATCGTCGAGAAAATCGTCGCGAGCATCGCCCCG 1098473 30 100.0 38 .............................. GAATGTTCGCCTCAGGAGCAACACCGCTCACGTAGACG 1098405 30 100.0 37 .............................. GGCTTCCCTCGTCGTAGCATATGGGTTCGGCGTCCAC 1098338 30 100.0 34 .............................. CTCGGAAGGTCGGCCCTCCACTTTTGGATCTTTA 1098274 30 100.0 37 .............................. TTAGTGCCATGCTCCCACCTCAGGTGATAACCGGGGT 1098207 30 100.0 38 .............................. CCCTGGTCGTCTTTCTGTGGGGGAAGGCCCCCCATATC 1098139 30 100.0 38 .............................. TTTACATAAAAGACGAGGACGGCAGGGTTTACTGGCTG 1098071 30 100.0 36 .............................. TAGAATTTTTGATAAACCGCGTTTCCCTGCTTACCC 1098005 30 100.0 37 .............................. GGGAGAAAAGTTATTTACGATGAAGACGCTAGGGGTT 1097938 30 100.0 36 .............................. TGAGATCCTGCCCAAAATCGGGGGTTACCATACAAT 1097872 29 86.7 0 ..................C...T..-..T. | AT [1097855] ========== ====== ====== ====== ============================== ============================================ ================== 41 30 99.7 37 GTTGCAATAAGACTTTAGGAGAATTGAAAG # Left flank : AGCTGAGGGAGCTTGGATTTGAGGTTATGTGAGGGTTATCACGCTCTTCTCGTTCTGTTCCCAATTCCGTCTCCAGGCTTCAATTTTTTGCCGAAATGCGCCTCCATTCGACGTTGGGAAGTTGATTTTTGCCTTTTCGGTTTTATTACTGGATGGCATGTTATTTTCTGATTTTGTGACGAAATTTTTTCAAATAGCTTTAATCAAAGCAGTCCCATCCTCAAATAGGCTGTTCTCTGTCAAAAACGTTTTTCCTACTATATAGTGGCCTGATATGAAAGCTTTTGTCGGAAACGGTGTGGACATCTCTTGGGAAGTTCTCGAATGTTCGTGAGATGTATCAAAAATATCTCCGATGAGATTGTTACAAACGGAACAGGGCTCTTGAGAGCCCGGGATAGCAAGCCTCATCGGGATGTTTTAACGAACCTTTCCAGAAAATCTTAAATATCAAAGGTCTCTTAACTCTCTAACGGGAAAAAGAAGGCAAAATGTGCCCT # Right flank : CAAACCTACAAAAACTCCCCGAACAGCAGGTCTTCCTTCGTGCCTCCCGCCTTCTTGAAGACCCTCTCGCTCCAGGAGACGCTCCCAACGTCCCTGGGTCTGTGGGCGTCGCTCGCGAAGACCAACTTTACGCCGCGCCTTATGCATTCCCTTATGAAGCTGATATCGGGGACGCGGTAGCGGGAGCTTATCTCGAAGGCCTTTCCGCTCGCCTCCGCCAGCTCTATGAGCTCCCTCAGGCTCTCCTCATCGGGATAGCCTATGTGTGGAAAACTCGCCCCGAAGTGCCCGATTATGTCAACGCTCTCATCGAGGAGTGCGCCCTTCACGAGCTCAACGTATTCCTCCGGGTCACTCAGCCAGAGGTGAACGCTGGCTATGACGTAATCCAGCTCTTCCACCATTCCCGCGGCAACGTCAACGCCGTTGTGGGTTATATTGGCCTCGATCCCAGCCAAGACTGTTATCCCGCTCTCCTCTCTCCAACGGCGGACCTCCCG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTTTAGGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA //