Array 1 47647-46327 **** Predicted by CRISPRDetect 2.4 *** >NZ_RRBA01000012.1 Methanohalophilus sp. WG1-DM scaffold_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 47646 37 100.0 38 ..................................... CAATTAAGTACACTTCTATAAGACTTCATGTTTTTGGA 47571 37 100.0 39 ..................................... CACAATTCAACGGATAGTTCCGCAAGTTCCTCACAGCAT 47495 37 100.0 41 ..................................... TTCAGTGAAAATACAGGTGTGCTGTGCCCGTTTGTTTTTGC 47417 37 100.0 41 ..................................... GCAATAAGTTCTGCTACTGTTGGTTTTGTATTTTCTGTCAT 47339 37 100.0 36 ..................................... CCTATACCTGCACCACACTACGTATAGTTTTACTAA 47266 37 100.0 38 ..................................... TCTAATAATTGGAATGTGGCCTCATCACGGGCGATAGT 47191 37 100.0 39 ..................................... TAATAATTGGTTCATTAGTGCATTCACGGCTAGCCCCGT 47115 37 100.0 38 ..................................... AATCTATATGTGGCATTTTAATATCAAACCGCATTGCG 47040 37 100.0 38 ..................................... ACACCGTATACTTCAACTATTGTAGGATAATTGCTTTG 46965 37 100.0 40 ..................................... AGTATATGTCATCCCAATCCGGGCGGGCGAATGATGTTAT 46888 37 100.0 38 ..................................... TCTGGTTGAACGTTTCCTGGTCAGTTATGTCAATATAA 46813 37 100.0 37 ..................................... TCCAATCCAATATACTCACCAACACTATCAGGATGAA 46739 37 100.0 42 ..................................... TTTGTTCTGTTTTCGGCCTGTGTCCAGGAAAATTCCACGTGG 46660 37 100.0 36 ..................................... CCAGTTCACCTGCGCAATATTTGAGATGAATATTGA 46587 37 100.0 41 ..................................... GCAGAGGACAGGCCAACATCTGCAAGAGTCGCAACAATTTC 46509 37 100.0 37 ..................................... TTGTCATTGTACTCTACCCTAGCTACTATTTCGTCGT 46435 37 81.1 35 .....A.GT...T....A..A..T............. TACTCAATCTCAAAATCTTTCTTTTCTGTGTTGTA 46363 37 81.1 0 .....A.GT...T....A..A..T............. | ========== ====== ====== ====== ===================================== ========================================== ================== 18 37 97.9 39 GTTGACATAAGCACCCGTGATAAAAGGGAATGGTAAC # Left flank : CAACCTTCACATTTTTTATTCGTGTCACATTTCAGGTTATAGCCAAGCCAGCCTCTGAATACACTGCCTATGAACTTCTTCTTGACGTTTTGATTAGTGGATATATCCACCTGTACAACCGTGGTTATCATGACACTCTAAATAATAAGAAGAGGATTCATATAAACTTATTGTATTTATTCTGTACAGGGAGTTATTTCTACATGAATTAATGCAATAAACGCACCTATATGATTTTAAATCATGAATACGTCATAGATTTAATTCGATTAATGAACTATGTGTAAAGACCTTTATAAGGGGTTGAGCCAAAAGGAGGTCTGTACACACAGATTATCATTTTCAGGCAATTGTGGGCAGCGTTAATTTTCACGACGCCTCCTGCTATCGATTGTACAGACCTTTTTAAAGGGTACTGGCAAATTGAGGTCTGTACACTACCCCCTCAAAAAGAAGTATTCTAAGGTCTCCAAAAAGGATTTAAAGGAAAAAAACATAGG # Right flank : TCGTCATCGACGAAATGGAGATCTATTCCTTGATTGATCAGTTTCAAATATAAATTCATCTCTTTTGAAACAGGAGATTCCTTCCGTAAGGTAGGAGAGATAAGAACAAATTTTATCGAAGTTCTGGAAGAGTAACGTTAATCTGAATCCTTAATACTACTTTTTCAAATTAAATCACCTCTAAAAAATACAATGAAGTCCTACCTCTCCTAAAAAACTGAAATAACAAAACTTATACAACTTACCATCAATCATTTGCTGGAAAAATAAAATATGAATGGGGTACTAAAAAGTGGGAGATATCAAACTCAATCCTTCACAATCACAGGCAGTTGATTATACAGACGGACCACTTCTAATACTAGCAGGTCCTGGTTCTGGCAAAACCCTGACCATTACGGAAAAGGTCGTAAACCTTGTGGATGAAGGATTTTCTCCTGACCGGATACTTGCCCTTACCTTCTCTGAAAAGGCCGCAGGTGAGATGGAGGAGAGAATTG # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGACATAAGCACCCGTGATAAAAGGGAATGGTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.30,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 60580-61535 **** Predicted by CRISPRDetect 2.4 *** >NZ_RRBA01000012.1 Methanohalophilus sp. WG1-DM scaffold_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 60580 37 100.0 40 ..................................... ATAAGTTAAGTTAAATCAATATTAATTGATAAAGTAAAAT 60657 37 100.0 35 ..................................... ACTATATAAATTAATTCATGTTTAATTTCAGTTCT 60729 37 100.0 39 ..................................... TTACATATTGGTTACTATCATCCAATTCATATACGCTAA 60805 37 100.0 41 ..................................... ACCTGTGCACCCATTTCAGAAGTAGCATCTGCACGTATCTT 60883 37 100.0 38 ..................................... AACGGATAGTCATATTTTTTCATTACATGAGGATATAA 60958 37 100.0 40 ..................................... TCACCCTGAACTCATACGGTCAAATCTATACGCTTAATGT 61035 37 100.0 40 ..................................... TTAGCAGCCTCCGTTTTGCTCATTCCCAATTTAGTCTTAA 61112 37 100.0 39 ..................................... TACCTGTTAGGCCATACATAGGTAGTAGTGCTGTAATCT 61188 37 100.0 37 ..................................... AGAACTTAATTTTCCAAGGTCGAACGGTGCATTATAT 61262 37 100.0 46 ..................................... TCGTGTGGCTGTGGTGCCTTCTCCTTCCACGTTTCCAAATTTTTAA 61345 37 100.0 40 ..................................... CGCCTGCCTCATGCGCATAAAACTTATCACATAGATATGT 61422 37 100.0 40 ..................................... CATTTTCTGTTTTGAAATGGTAGTTTTTACCATTTTGGGA 61499 37 83.8 0 ....................A..T.......AC.TC. | ========== ====== ====== ====== ===================================== ============================================== ================== 13 37 98.8 40 GTTGACATAAGCACCCGTGATAAAAGGGAATGGTAAC # Left flank : GTTGTGGCATATGATATTGAGAATGACAGGACAAGATTACAGATTGCCGATATTCTTCAATATTATGGTTTAATGAGAATTCAATATAGTGTTTTTGCAGGTGAAATTCCTTCGAATAAAATAAATGAATTGTCCTCCCTACTATTTGACAGTAATCTAGCAGAAACAGATAATATCACAGTATTTCCTTTATGCAGGGAATGTCTGAATAATGTCCTTACATTAGAACCATTGCCTCAGGAAATCAAGCATCTGTCATTATGATGTACAGACCTTTATAAGGGGTTGAGTAAAAAGGAGGTCTGTACACATATATTATCATTTGTAGGCATCAATGATAGAAATCTTGCCTTAAACGGACATCGACTTTATATTAATATTTTTTTGATGATGGCACTTGATAGTGTTTTACTGATGTTAACAGCGTTAATTTTCACGACGCCTCCTGCTATCGATTGTACAGACCTTTTTAAAGGGTACTGGCAAATTGAGGTCTGTGG # Right flank : CTTTTGCAATCTATTTAGACTATGTGACAAATTATCCACTCAAAGAACGATTTGCTCAATAATTATAGGTCGATGAACATGGAACTTAATGAAAAAATGTATTATGCTTGCTCATTATGCAGTACAGAAGATAAGGTTGTATGGCACAGACCAAAAACGAAGATCTGGCAAGAACACAGACGATACATCGATTTAGATCAGACAAATTCAGAGACTCCACAATACTTCTGGTGTCTAAAACACAATCGTGCACATTCATTGAAAAGAGAATGCCTGAAATATAAGGCTACAATTACTTTCAATGGTAATGAAGGAAATAGGGATTGTAATACAAAACAATTATCCCATAACGACACACTTGATGAAATCAGAAAAACCGTTACTGAAAAGTCCAATCAATTGGATTGGAAAAAAGTTATTGGCAGCAACAGTCTTCCATATCCCTGCACCAGGGAATCAAGGTTGATATTACCCGACATAATATATTGTCAGCGTGATCC # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGACATAAGCACCCGTGATAAAAGGGAATGGTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.60,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 58614-52693 **** Predicted by CRISPRDetect 2.4 *** >NZ_RRBA01000007.1 Methanohalophilus sp. WG1-DM scaffold_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 58613 37 100.0 38 ..................................... TAAGCAAGTCTGTGAAAGAATGCCCGGTCGATACAGGT 58538 37 100.0 38 ..................................... CTTTAAGGGTAGCCGTGAACTGCACCTGTCCATCTATG 58463 37 100.0 37 ..................................... CCATACACATCCTCAAAGTCTGCCATTGCGTTGAAAT 58389 37 100.0 36 ..................................... TGATCGCACGGAGAATATAGACAAAACCGGGGTAAA 58316 37 100.0 38 ..................................... TTCAGCGTTTTCTCCTTGCCATCCAGTTTGGCGATAGC 58241 37 100.0 36 ..................................... GTATCAAATGGGATACTGCAAGTAGTTCACCTTCAC 58168 37 100.0 37 ..................................... CTACTCAAAAAGAGGGCGGACTACTCTATATTAGAAC 58094 37 100.0 36 ..................................... ATCTAGAAATAGAGATCGGGAAATGATAACCATGTC 58021 37 100.0 37 ..................................... AAAAACACCATGACAGGAATAAAAAAGCCCCTGATCT 57947 37 100.0 42 ..................................... TCCCCTGGCGCCTATGGGGGATTGTTGCTTATTGCTTGGCGG 57868 37 100.0 38 ..................................... AATATTGGCAGAAGATGCATGATGAGACCACAGTATGT 57793 37 100.0 34 ..................................... AAGGCTCGCCCTGGGTGATCTCATGAATAGCCGC 57722 37 100.0 35 ..................................... CTAACACTTGTACACATAATGTGTACCAAGATGGT 57650 37 100.0 37 ..................................... AGCATGGTCTAAGGTTAGTCTTAAGCATGGTCTAAGG 57576 37 100.0 36 ..................................... TATTCAAGGAGGAGATTCTGTATTAGGTAGGTTTGA 57503 37 100.0 36 ..................................... CCTACGGTGACAATGCTCGTGGTGATGGACTTGACT 57430 37 100.0 37 ..................................... TATTATATAGATGATACATTATCATAGTATCGCCTCC 57356 37 100.0 35 ..................................... ATCATGAATGGAATTAAAGAACATGGAATTAAGCT 57284 37 100.0 36 ..................................... ATAAAAAAGTTGACGAGATGTCTAAAAATCCAACGT 57211 37 100.0 37 ..................................... TTAACCACCTCATGCATGAACAGTGAGGAAAAAAATC 57137 37 100.0 36 ..................................... AATTAACATCTTTCTCAATTTTCACACCAACACGTT 57064 37 100.0 38 ..................................... AAATTCTCTATCCATGTTATAGTACCTATTTGGCATAA 56989 37 100.0 36 ..................................... ATGATTGCAAGGGTGCATGAGTTTGGTGTAGATATA 56916 37 100.0 39 ..................................... AGATAGAATGTGGTAGAAGGAAGGCTAAGGAGATGTGTG 56840 37 100.0 36 ..................................... TACTTTCATCAGATTGGACACCATTGATGAGATGCA 56767 37 100.0 35 ..................................... TAGTTATGCATTTATTCGGCCTCCTCTATATATGC 56695 37 100.0 38 ..................................... CAATTACAGAACAAATTAATGATAAAGTCAGCAATATG 56620 37 100.0 37 ..................................... TGAATGTGTCAAGTTCTTTTGACAAACTCATAATCTC 56546 37 100.0 36 ..................................... AATTAGACATAGTTGTAGGGTTGTGGTAAAGTTTGA 56473 37 100.0 39 ..................................... ATTAGTATTATCCGCAGGTTGCATAAGCAAAAGCATTAT 56397 37 100.0 37 ..................................... ACATAATCAGACACATATAGACAGATACAGACAGATT 56323 37 100.0 37 ..................................... ATTATCACTGTCACTCCGTCTGTACTTGTATATTCCT 56249 37 100.0 36 ..................................... CCCAACAAGCAACTGCTCTGCAAAAACAACTAGAAT 56176 37 100.0 35 ..................................... CACGATATTCAGCATCTACGGCATTGTACCCAATG 56104 37 100.0 36 ..................................... TTTGTCGGAATCGGAATCTAAAGAAGCAACTAATTT 56031 37 100.0 35 ..................................... ATTATCACTGTCACTCCGTCTGTACTTGTATATTC 55959 37 100.0 36 ..................................... TCAGGCTACTCGGACTCCAGTAATCCGCTACAAGTT 55886 37 100.0 37 ..................................... ATTCTCAGATTTCCAATAATATTTGGATTCGTCAGAC 55812 37 100.0 37 ..................................... TAAGGAACATCCAATACATCTTTTGCTTCTTTTATCA 55738 37 100.0 37 ..................................... ATTATAGGTACATCAGCAATAAATGCTTATGAAACAT 55664 37 100.0 37 ..................................... CTAAATCATATCCTGTATTACCTGTATAAAGTATTTC 55590 37 100.0 35 ..................................... CCCAATATAATATTAGAACCATCTGGTGCTCTAAA 55518 37 100.0 37 ..................................... AGAAAAAATCTTATAATGATATTATACAGGATCTAAA 55444 37 100.0 36 ..................................... AACAGTTGTCTGGTATAACAATTCCAGGGTATTCTA 55371 37 100.0 37 ..................................... TGATAATAGAGGTATTGGACAAGTTGTTGCCACAATA 55297 37 100.0 36 ..................................... AAAATAGGAAGAGGCATTGTAGATAAATCATCCGGG 55224 37 100.0 35 ..................................... GGAGTTACAAGATCCTTGCAACCAATAGTAGACAA 55152 37 100.0 36 ..................................... CCAAATTTTGTATAATTTAGAGCGTCCCTGGATGTA 55079 37 100.0 36 ..................................... ATACAGTATATGGAGGATGATGAAAATGAGTAATGT 55006 37 100.0 37 ..................................... TGTGAATCAAAGAAATGACGGGCGTGGCGGTATTCGC 54932 37 100.0 37 ..................................... ACCAGTGTTGTCGCTGGTCAGGACTTGGCTGTTGTGT 54858 37 100.0 36 ..................................... CCAAGTATTCTGGGTTCTCAATAATATAGTCCTGGA 54785 37 100.0 36 ..................................... TATTCTTTTCTTTGATTGCTCTTCATGAAAATTCAA 54712 37 100.0 36 ..................................... CCTTCGGGACCCAGTCACCATTCCCATTGGTATATC 54639 37 100.0 35 ..................................... GATATCGTCCCTTTCTCAGGAACCATGTGGTTGAC 54567 37 100.0 36 ..................................... CAGTATTGCCGGTATTGTTGACTCTGGCCACATCAA 54494 37 100.0 36 ..................................... CATGCTTTCCAGAAACCGATCTACCTGTGGAGTCAG 54421 37 100.0 36 ..................................... CCCGGGCAGAGAAGGAGTTGAGAAAGACTTCTTCTA 54348 37 100.0 38 ..................................... TACCGAAGCCTTTGGGTTCTGTGACTCTGACGAGTCTG 54273 37 100.0 34 ..................................... GAGATCTTCCCTTTCTCTGGGACCATGTGGTTGA 54202 37 100.0 35 ..................................... TACATTGAGAAGTTTCCATCTTCAACGTATTCATA 54130 37 100.0 38 ..................................... TGTTAGGCTTGAAGGGTTCGACCCTGATACGGGTGCAA 54055 37 100.0 37 ..................................... TATTGTTATATAAGAGTGTATCAAATTGTAGGTGATT 53981 37 100.0 37 ..................................... TACTCTGATTTTATTTTATGGATCGCCTTTCCTGCAC 53907 37 100.0 36 ..................................... ATGTGTATAGAAAAATAGGACAATCAGATGCAAGTT 53834 37 100.0 37 ..................................... CTTGCTGTGAATGTGCTCGCTGTAATTGTGTCATATT 53760 37 100.0 39 ..................................... AATGCCCTACCTGAAATCAAAATGCCTGACATTACCGTG 53684 37 100.0 36 ..................................... TTATAGGTATCAATTGTCATGGGGCGGCCCTTCGGA 53611 37 100.0 36 ..................................... TCATATTGTTATATCTTTTCTGCATATTTTCTTATT 53538 37 100.0 36 ..................................... ATATCAATATCAAAAAAGGAAATAGGGTTAAATTGT 53465 37 100.0 39 ..................................... AATATCAGTAGCAAGCGGAGCATATCAGGCAAGTACGAT 53389 37 100.0 35 ..................................... ATCTTGGATGTGTCCAGTTCAAAGTTTTTGTCAAT 53317 37 100.0 35 ..................................... CTTAGAACCTGTGATACAGATAGTAAGGTACTATT 53245 37 100.0 38 ..................................... ACATTCTTCTTATATCGTCCATTGCATCATCATGGCGT 53170 37 100.0 36 ..................................... TATGTGGCTGAATATGTTAATAGCACCGTTTATGTG 53097 37 100.0 36 ..................................... AAATCTTATGCACAGTATCGCTGGCTATTGGTTTAT 53024 37 100.0 36 ..................................... CTCAATAGGATTTGCTACAAGAGGTTGTTTCCGAAA 52951 37 100.0 37 ..................................... TAAAAGATCAAAAAAAATTAGTATGGTTCGGGAAGAT 52877 37 100.0 39 ..................................... ATTTTGCCCATCACGACCACCCATATACAGTAAGCATAT 52801 37 100.0 34 ..................................... CTGTGAAAAAACTTTCACAGAAGAATTCAAACTA 52730 37 91.9 0 .............................G..A...G | T [52696] ========== ====== ====== ====== ===================================== ========================================== ================== 81 37 99.9 37 GTCAAAATTCAATATCCACTAAAACAAGGATTGAAAC # Left flank : ATATAAACGTCTTCAATTGGTTGGTGACAGACTTGCTGAAATTGAATCATTGATCGATTGGAAACCTTTTCGACCAATCTTAGAATCGATGTATAAGAATAGAACAGCTTCAGGCGGCAGACCTGAAGCTGATGTTATTGTGATGTTCAAAATGCTTGTTCTGCAGCAATGGCATGGTTTATCTGATCCAGAACTTGAAAGACAATGTATTGACAGAATATCATTTAGAAAATTCCTAGGATTTCCTGAATATGTACCAGACAATACAACTGTCTGGTCATTCAGAAAGAGAATTATTGATAATGGGAAAGAGAAGCAAATATGGAATGAGATGCAGAGACAGCTCAATGCTCTTGGTTTGGAAATCAAAAAAGGAACGATCCAGGATGCAACTTTCATTCACTCTAACCCTGGTCATGCTAAAGCTGACACACCCAGAGGAGAGGATGCTAAAACAACGAGAAGCAGAGATGGAACCTGGGTGAAAAAAGGAGGTAAAT # Right flank : TACCTTAATACAATTCAGGAGATAACCATGAACAACGCTGATGAAATCATAAAATACCTTGATATGAGCAAGCACCCCGAAGGTGGGTTTTTTAAAGAAACATACAGATCCGGGGAAACCATCAAACACCAATACCTACCGAAAAGATTTACTATAGATCATGCGTTTTCCACGGCAATCTACTTTTTATTAAAACAAGGCGAATTTTCAGCACTTCACACAATAAAACAGGAAGAAATCTGGCATTTTTACAGTGGGGCACCCATTGACATACATATGATACATCCAAATGGTGATTATGAACCAATCCATCTTGGAAACGACATATTAAACGGTGAGATACCACAGGGTATTGTCCCTGCAGGTTCAGTCTTTGGTGCAACAGTGTGTGATAATTCCAAATATGACTATTCACTTGTGGGATGTACGGTTGCACCGGGTTTTGAATTTGAGGACTTTACACTACATAAGAAAGATGAATTACTGGAAAGATTTGCCCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAAAATTCAATATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.90,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA // Array 2 62143-61229 **** Predicted by CRISPRDetect 2.4 *** >NZ_RRBA01000007.1 Methanohalophilus sp. WG1-DM scaffold_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 62142 37 100.0 36 ..................................... TGTAGGTCTTAGGTACAAAACCTATATCCTGGCTAA 62069 37 100.0 36 ..................................... AACAGGCATACCAAACAGCCCGGGAATCAATGACAA 61996 37 100.0 37 ..................................... TTGTTAATATTTTATTCGATTTGATACTAACAATAAA 61922 37 100.0 35 ..................................... ATGGATCGTTAAAATTAACTTAAAATTCTATGCTA 61850 37 100.0 37 ..................................... GACTCATGATACACATGCACAGCACATGCACCATAAT 61776 37 100.0 36 ..................................... AACAGTACCTGCCGATAGCGTTTTTAAATTAGTGCG 61703 37 100.0 38 ..................................... TTCAATGCATACATAGTTACCACTCATTGCTTAAAAGG 61628 37 100.0 36 ..................................... AAAATTCTGAATATCCGGGGCTTAATTTGTTCTTAG 61555 37 100.0 35 ..................................... TTTATGTCCTGGTTAAAGCCCAGGACCAGGACGCC 61483 37 100.0 37 ..................................... GATTTATGGTCTAAGGTTAGTCTTAAGCATGGTCTAA 61409 37 100.0 33 ..................................... ATCAACCCTTTTATCGCATAGTTGCGGTTGCTG 61339 37 100.0 37 ..................................... ATTCCATTAACCAGGAAATAAACATACTGGAACGTAT 61265 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 13 37 100.0 36 GTCAAAATTCAATATCCACTAAAACAAGGATTGAAAC # Left flank : ATCTAAAGAAAGAAATGTTTTTGTTGCCTCAAAAGTAAATCACATTAAAGGAATTGTTGATGAAGTATTGTTTCTCGAAGACGGGACCGCTGCTCCTCTTGAATATAAGTTTGCAGAATATAAAGACAAAATTTATATGACTCATAAATATCAGCTTTATTTGCAGGCATTGATGATTTCTGAGAATTATGATGTAGAAGTCAATAGAGCTTATATTTGTTATACACGAAGTAATAATATGGTCAAGTCTATTAAAATTGAACCTGAGGATGTGGATGAGGCTATAAAAGTTGCCAAAAAGACAATTGATATAATAGAAAAGGGAGTATATCCAAAGGCAACAAAGTATAAATCCAAATGCATTGATTGTTGTTATAGAAATATTTGCGTATAATTCTTGTATTTATAAGGGATCTGATAGAAATGGTTCAAGAATTGAGATACTTGAAAAGGAGGGATATTAGGGCTTCTTTTGGACAAAAGAGGGTGAAATTTGTGCT # Right flank : GCTAAGAGGAAGCTTGTATCCAAATATATTTCCGAGTATCAGGAAAACCATACGAAAGATGGCCTATGATCCGAAGGGATTTCTTAATTTTTTCTATTTTTGGCTTTGTAGAAATTTTCAATAATACAAAATATACAATCTTAACATACTGTCAAGATTGTGTATTAATACCTTGAATTTCACTTTTTTACCAGTGTACATCAAGCAAGTGTTCCACGTGTACCAACTGCTCCATCATTAATGGTTCCAAATGGAAGAAGATGGGGTTCTCTAAGGGTACGTTGCATTATATGAAGCGGAGGCAAGAAGTGGCAGTCGTTTGCTCTCATGCTCATGTAAGGGAGAGGTTAGAAGAGTTGGGGAGGGGCTGAATGAATCAAAACTCTTACTCATCAGATATAATTTCATCAGAAAAATTCTCATTTGTTTCTGTAAGGCATTCTGTTTCTTGAGAAGTTGTACAAAGACTGTGAATTAATTTTAATGTATAGATTAAATCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAAAATTCAATATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.90,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : NA //