Array 1 249289-250658 **** Predicted by CRISPRDetect 2.4 *** >NZ_QATG01000011.1 Salmonella enterica subsp. enterica serovar Saintpaul strain sg_t7 t7_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 249289 29 100.0 32 ............................. CAACAGCGTCCCGTATTCTGTATCGTTGACGG 249350 29 100.0 32 ............................. CGCATTACTACCGGGATTAGTACCTATCAAAA 249411 29 100.0 32 ............................. GCAGACGCTGCCGTCCCCCCGCTCGACGCTGA 249472 29 100.0 32 ............................. CAGCGGGAAAACGTCCAAGTGCCCATATCCCC 249533 29 100.0 32 ............................. CCTTCAGAACATGCGCGGTATTATTTTTGACC 249594 29 100.0 32 ............................. CCGTGGAAAGAACCAGAACGCTGGATATTGGT 249655 29 100.0 32 ............................. ACCACATCAATGACCACATCACGCAGATATTA 249716 29 100.0 32 ............................. CGCCGTGTTTACTTCAATAGCGACGTTGTGAG 249777 29 100.0 32 ............................. AGGTTGACCATCGTCAGCTTCATAAAGATTTA 249838 29 100.0 32 ............................. GGCGTTATTGAGTGGGAAAAAATCGTAAGCGC 249899 29 100.0 32 ............................. ACGCTCTATAGCCATTAGGTGCGCCACCACTT 249960 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 250021 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 250082 29 100.0 32 ............................. CGATAATTTATAAATTTTCGTCCACTCATCAA 250143 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 250204 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 250265 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCGGACCAATCGACTA 250326 29 96.6 32 ...................A......... CGCCGCCAGCTGGAAAAATGCCGCCTGTTAAT 250387 29 100.0 32 ............................. CTCCAGCCGACGCATTCGCTTGATCGCTTTAT 250448 29 100.0 32 ............................. GGGCTGGACCTCGATTTATTTAATACGTTTAT 250509 29 100.0 32 ............................. TCCCAACTCGTCAGGGCGGTTATCCAGCGCCA 250570 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 250631 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATTAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 266918-267619 **** Predicted by CRISPRDetect 2.4 *** >NZ_QATG01000011.1 Salmonella enterica subsp. enterica serovar Saintpaul strain sg_t7 t7_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 266918 29 100.0 33 ............................. TTGAGCACGACGAAATTTGGGTTTGATGCAGCC 266980 29 100.0 32 ............................. GTTATTCAGTTTATTAAATTTTTCCGCCAAGT 267041 29 100.0 32 ............................. CAACTGTATTTTGCGTTATTACGCTGAACCAG 267102 29 100.0 32 ............................. CCGAGGTCGGAGCGGATTGACTTAAACGGCAA 267163 29 100.0 32 ............................. TGCAACAGCAACAGGAGAGAATGCGGCAGCGT 267224 29 100.0 32 ............................. CGTCAGTTGCTGGAACTGGGGCACGATCTGGT 267285 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 267346 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCCTCCTGC 267407 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 267468 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 267529 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 267590 29 96.6 0 ............T................ | A [267617] ========== ====== ====== ====== ============================= ================================= ================== 12 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //