Array 1 11002-11839 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJJW01000026.1 Campylobacter lanienae strain RM8001 RM8001contig00026, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 11002 37 97.3 36 .......G............................. ATATCAAATTGATGAAGGCTCTAAAGTAAATATAAA 11075 37 100.0 35 ..................................... AGCGTCTTCAAATGATAAAGCTCCAGCGTCATTGC 11147 37 100.0 35 ..................................... TTTTTCGTAGGGCAAAATCCATATGCGTGGTATCA 11219 37 100.0 35 ..................................... CAAAGAGAGAGATACTACAAAAAACTTATCAAAGA 11291 37 100.0 37 ..................................... AAAATGTTTTTAACTTTGTGATTTTTAAACTTGTTAT 11365 37 100.0 36 ..................................... AGCTTGAAGCGATAATTGATATAGAGACTGGGGAGT 11438 37 100.0 36 ..................................... TGATTCATAACTGGGTCTTGATTATGATTCATAACT 11511 37 100.0 35 ..................................... CAGTAGCAATCATAGCCACTACTAAATCATATAAG 11583 37 100.0 37 ..................................... AGCAAATAGAGCAAATAATGAATTCAATTAGGCAATA 11657 37 100.0 37 ..................................... CTCATACAGGTGGTTTTATCATCAAGGGTGGTATTAA 11731 37 100.0 35 ..................................... CTAGGCACACTCGCTCCGTCGGTTGTGTAGCCCTT 11803 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 12 37 99.8 36 GTTTCAAACCAAGTTGGATTGTGGTATAATTTGCAAC # Left flank : CTTCTGTAAGCGTAGCACATCCATTAAAAATCCAACTACTAAAACACCAATCACTAAACTTTTTTTCATTTTTCTTCCTTTGTTTAAAGTTCAACTATTTTAATAAATTTTTGGTAAATAATTATTTATAAATCTAAAATTTTTTAAATTGTTGATATTTTTAAATAATTCTATTATTTATAGCTTGAGTTAATATTTCCATTTTACTCTCCTAAAAATTGTTTAAAAACTTCTCTACATTATCACGCTCAAAATATTTATAATATTGTGTAGCGATACGCATTAAAATCATCTCTCTTAAACTTATCAGCTCGAGCTCATCACTTTGATAAATTTTATATAACGAAGCATTTACTAAATCTATATCATCAAAATTAGCCGCTATACCTAATTCTGTGGCAATCTCATCATAAAATAGCTCTATTTGCTCCCCTTTTTTGTAAGCACAATTCTAAAAGCATTTATAAAGTCTTGAGTGTTTGTAAAATTTTTGTATTTGT # Right flank : CTCCGCACAAAATGCCCTGTTTTAGGGATTTTGTGCGGAGTTAATTGTAAAATTTTTTCCACTTAGAAAAAAATCGCAAAAAGTGGCGAATTTGTGGAAAAATATGTTATAATCCAAGCGCAAATTATACCATAATCTAGCTTATAGCGTTTGAAATCACCACAAGGTGTTTTCATATCGGGGCAACTGCCTTTGGCACCCCCGGTTATTCTCTATCATCACAATAATTTTTAAACTCACATTGCGCACAAGCTGTAATGCTAGCTGAGCTTTGGGGGAAATATCCTTTTTCTAATAGATCTTGAATTTGCGTTAGTGTTTTATCAAAATAAGCTAAATCCTCTTGATAAATTTCAAAGATTTTAAATTTTAGATTATTTGAGTAGCATAAAATCACCCTATGAAAAGGCTTTTTAAAGTGTTTGCTAGCAAGTTTAGAATATGCTATAAGCTGCATTTTTGCGCCCTTGCTTAAAATTGGCTTTGATTGGTTTTTAAAC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAAACCAAGTTGGATTGTGGTATAATTTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.90,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA //