Array 1 115287-116839 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP065924.1 Staphylococcus pseudintermedius strain SP_11304-2A chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 115287 36 100.0 35 .................................... CAATATTAAACCATTAGATAATTTAAATTGTTCCC 115358 36 100.0 37 .................................... TGAATATATTTTTAAATCGATTTTTAACATCTTCTCT 115431 36 100.0 36 .................................... TTCAATTCCTTTACATTTTAATTTTTCCGTGTGCTT 115503 36 100.0 35 .................................... TGTAATTTCTAATACTGTTATTGTTTCATCATATT 115574 36 100.0 35 .................................... TGATTTTAAATATAAGCTATCAGTATCACAATAGA 115645 36 100.0 37 .................................... CGTGATTAATCACTAAATAGATTTTATCACTATCATA 115718 36 100.0 37 .................................... TCAAAGGAGGAAAAACAAATGAGATATGAAATTGGAG 115791 36 100.0 34 .................................... TGATGATTTCTGCTATTTCTTCTAATTCATCAAT 115861 36 100.0 35 .................................... TGTATGCTTTTCCTTTTTCATTTTCCATCACTACA 115932 36 100.0 35 .................................... GTAAATGGAGTTCTTAACTTCATTTCACGGATTTT 116003 35 91.7 38 ...-..G.C........................... CGTATCAACGTCCTCACCAGTTAACCAGTATAAAACGT C,CT [116011,116014] 116079 36 100.0 37 .................................... TGAAAACTCATCACCTAAGTGTTCTAAAATGTACTGT 116152 36 100.0 37 .................................... AGGAATTGATACAAATGAAAAACACATTAAATAACGT 116225 36 100.0 34 .................................... TAAAAACATTTTCAATTTCTTTTAGTAATTCTTT 116295 36 100.0 36 .................................... AAGAGGTGGACGCTATGGAGTTTATGGAAGAAAACG 116367 36 97.2 37 ..............T..................... TGAAAATACCGTTGCATAACTTTAGCGAAGTCGTTTA 116440 36 100.0 35 .................................... TACTAGCCATTCCGACTAGGTCGTGAGGACATAAA 116511 36 100.0 35 .................................... ATTCATCAGATTGCATCAATTTTTGAAATTCTTCT 116582 36 100.0 37 .................................... TGCGCTAATGAAGCTAAATTGACGCCCTTTATATTCA 116655 36 100.0 36 .................................... CGCCAATGATTTCAGCAAATTCAAACACCATTTTTC 116727 36 100.0 41 .................................... CCTCAATACCTGTACCAACTTCTTTTCCCCAACCAAATACA 116804 36 88.9 0 ............C...T..T............A... | ========== ====== ====== ====== ==================================== ========================================= ================== 22 36 99.0 36 AATCGAATAGAGACCCCGACATTAGGGGACGAGAAC # Left flank : TATGAATGAAGTCGGATGTGTCGCGTACAGTAAAAAAGTGGGAGTATGGTAGTTTTGGCAATTGAATAGGCTGCGGAAATATGTTGACTGCAAAAATACATTGCACATTCCGATGAGCTTTTTGAGTACGAAAAAGTTAAGAATAAACAAAAATTGAATTGTGCACAGCTACAGCATATTCGACCAGAAGTTAAAGGTTAAAGAGAAGGTGTCAGTATACAAAGGAAAAGTGGAAAATATACGATAATTACCATGAACAAGAATTGATTTAAATGAAAACGTTCAAAAAGTGTAGAAGAGGATAATCATGTGGAGAGGATATGAATTGGGAAAAATTTATTGTATAATATCGATGATGTGTTTTGAAAATTTTTAGTTGGTTGAAACTGAAATGTCTAAAAATTGGACAATTAGGATATTTTTAATGTTGAAGTTGTCTTAATTTCAGACGCGGTTAAATGATAGATATTCTCGCTATCAAGGGATTTCTATAGCTGACT # Right flank : CTTTCAGCAGCCTGAGAATATTCTTTTTCACTCAAGTCAATCGTATTGAAATACGGATATTAAGGGGGCTTATACCATTTATAGTATTTATAAAGTGCTTTTAAGGAGAGGTTACGATATCTGGAGCGTTGAAAAATGACATAACAACATAGAAAGATGAATGCAACGTTTTAAAAATTACAAATAATTCACAATTCTATTGTTGGAAATAAAGAAATGTTGTAAAATTTAATTAACATTTCAAGCGATAAAATGGGGTCTTATACATCTTGATGAATTTTTGTATTTATTGCATATTTTTTAGTCATAGCCATTTAAAGTGTATGTATTAGTGGTTTTGATTGGAATTTTGAAGAAATAATAAGCAGATTAAAGGTGTTGAGATTGGATATACTACTATATTGATATAATGACTCACTGAATCGTATTCTTGCTTTTATCTAGGGGGTGTAAAGATGAAGGATATCATTTATGTTGAGAATCATCATTTTGTCAGTGTG # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCGAATAGAGACCCCGACATTAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [14,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 2 739673-740825 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP065924.1 Staphylococcus pseudintermedius strain SP_11304-2A chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 739673 36 100.0 29 .................................... GATAATTTGTTAAGCCATGCAATTGAGAC 739738 36 100.0 30 .................................... TGATGAATAAGTAAAGTCTTCAGGCTTTAA 739804 36 100.0 30 .................................... ATCGTATGAATAACGTTTGTCTTTCTTTGC 739870 36 100.0 30 .................................... CTGAATCGGGTCAACGGCTGTGTCGTTTCC 739936 36 100.0 30 .................................... AAAGATTATGCCATCTTCAGTTACTTTAAC 740002 36 100.0 29 .................................... TCGTTTTGTGATAACAAATCAAGTGATAT 740067 36 100.0 30 .................................... GATTATGGTGTCGAATCAAAATCAAATTAC 740133 36 100.0 30 .................................... GATGAGAGGTGTAAAAGCACAATTGCATGA 740199 36 100.0 29 .................................... TGTATGAGATGAAACCCAAATTTAGAGCA 740264 36 100.0 29 .................................... AGCTCGTCCGCCACCTACGTTTTCATCTT 740329 36 100.0 29 .................................... TATACGTGCAAACGGTTCTCTTTTAATTT 740394 36 100.0 30 .................................... CGGCACAGATTGTGTGATTTGTTGACCTGC 740460 36 100.0 30 .................................... TCAAAAGTATTTCGTCGAGATGGAGCGACT 740526 36 100.0 30 .................................... TGAAGATTTTCCACGCCAATGTATTTTTAT 740592 36 100.0 29 .................................... TAAAATCAGAAACAAAAGGGCAAGCGGTT 740657 36 97.2 30 ............................A....... TTGACCGTGCAAAAATTAATCACAAGGCGC 740723 36 97.2 30 ............................A....... GTTATGATGTTTGGCGATATGGGTCGTCGT 740789 35 86.1 0 .........T................-.CA.C.... | TT [740822] ========== ====== ====== ====== ==================================== ============================== ================== 18 36 98.9 30 GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC # Left flank : TTTTAATTATATTATTTCCGGAATCACATCTTGGCATACACGATATTAAAAAGTTTATACACCTTATAAAGAGATATAAATTTACCACGATTATTTTTACTAATCATCCTTCTATCATTATTAACGAGGAAAACATATTTCTTTGTAAAAGTAATAAGAAGTGCCACGACATCGAAAAAATATATGAAGAATTAATGTTATTTGTTCCTGAAGAAGTAGTGAGTCATCAATTAGTTAACATGATTGCATATCACGAATTCGTTGGTGAAAACCTTTCCGAGTATGAGCGATATTTTAAGTTTATCAATCATTACAATTAGGCTATACTATATTTAACATTATATGATAGAGAAAAGTTGATCCAACGATGAAGTAATGACTATGTGACTTCATTCGTGATGAAGAGGGTTAACTTTATCATCGAGTATCATATCTGACTTCTTTTAATAGTGCCAAGCCTCAATTTTGAAAAGGATTGAGTTAATGTTTTTGGATTTGAG # Right flank : CCTTCTTTATAATCGTACATCAACCTCACTATGCCTTCAAAATAAATAAGAGGCATTGTGGGCTTTTTGTGTTTATACGAAATGTTGTACGAATCTCTCAATTGTGCCACCATGTTATAATAGGTATAAATTGTTCATAAAATAAATAGAAAGCAGGGGAAATCTATGGAAGCAATTATTGCAACTCAACCGTTCCAATTAGCAGAAGGTCAAAAGTTTGAAAAAGTATCGCGTGAGCTCCCAACACCAGAGGCGCATGATATTTTAATCAAAGTGTACGCAACAGGGATCAATCCGGTTGATACGAAAATGCGGCAAGCCCCGTTAAATGCTGAGGCACGTGTCCTAGGTTTTGATGCGGCAGGTGTGGTTGAAGCGGTCGGCGATGCGGTTACGGATTTCAAACCGGGTGACCGAGTATATTATTCAGGATCGAATCAACGAGATGGCTCAAATCAGACGTATCAGCTCGTGAATGAAAATTATTTAGCGCATATGCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //