Array 1 60972-58322 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP043902.1 Shewanella sp. LC6 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 60971 37 100.0 34 ..................................... CGTAGCATTTCAACCCCGTGAGCAGCGAGCTGTG 60900 37 100.0 33 ..................................... TTATAAGCCATTTACGCATTTCCTTTTATTAAA 60830 37 100.0 32 ..................................... CTCAAATGCGAACTGGTCTTGCAGATACTTAG 60761 37 100.0 32 ..................................... TGCCGCCCTTAAGCGGCAGTCTCTTCTAATAT 60692 37 100.0 35 ..................................... CACCTTACTTATACCGGTTTTTACGAATTGTTGAA 60620 37 100.0 32 ..................................... CTTGGCAGGCGGTGTGGCTGCCGACAGCAATA 60551 37 100.0 32 ..................................... TCTTCTTCATTTAACAATTCACCACTGACTTT 60482 37 100.0 33 ..................................... CAACAAATCAGAAACGATTTTACTTAGTTTACT 60412 37 100.0 32 ..................................... GGCTAAGCAAGCGCGGATGATTGACATAACAC 60343 37 100.0 32 ..................................... GTAGGAATTTTCCCGTTCTCAACTGTTGCTTT 60274 37 100.0 33 ..................................... ATACTTTGGATGATGTGCCCAGATGACTTCAGG 60204 37 100.0 32 ..................................... CCAGATTTGCCGTCACTTTGGCATCGTTTTAG 60135 37 100.0 32 ..................................... GCACGCCACGTACTGTGGCTATGATCTTTTGT 60066 37 100.0 32 ..................................... GATGTTAACGTGGCAACAAAGTGATTCTAAGC 59997 37 100.0 33 ..................................... AAATGGAACTACACTAACAACGACGATACTGGC 59927 37 100.0 32 ..................................... GGTGAGGTCTTGCCCGGTGATCATCAGGATAC 59858 37 100.0 32 ..................................... CATCAACCACCATATCCTTGATGCTTGTGTTG 59789 37 100.0 32 ..................................... ATAACAAGTGGCATTGAGTTATACTTTAGTTA 59720 37 100.0 31 ..................................... GCCCCAGCTGCGTTTCTGTCGCTTAGTGAGT 59652 37 100.0 32 ..................................... GTAAAGTCTTCATCCTCTGCGCTCAACTTAAC 59583 37 100.0 32 ..................................... GTAAAGCTTCTTGTGTACGATTATACATTATG 59514 37 100.0 32 ..................................... ACCGTATAGAAACTTAATCCACGGTTTTCTTT 59445 37 100.0 33 ..................................... TTTTACTGCTAGACGGTCGAACATAGGATTGTT 59375 37 100.0 5 ..................................... TGTAG Deletion [59334] 59333 37 81.1 31 ...GA.TG.GCA......................... AAATCACCTTTAAGCGCAACCCATGCCTTGT 59265 37 100.0 33 ..................................... CACGTACGATGAGTCATACGTTTGTTTTGTTGA 59195 37 100.0 33 ..................................... CACGTACGATGAGTCATACGTTTGTTTTGTTGA 59125 37 100.0 33 ..................................... AGCCTTACCAGCCACCATAGGGCTTACAAATGG 59055 37 100.0 31 ..................................... CTACCATATCTTTGATGCTGGTGTTGATTGT 58987 37 100.0 34 ..................................... ATTTGAATCAGAACCGCTTCTTCCCATTCTTGTG 58916 37 100.0 34 ..................................... CATGTACCTATTCCCATTTGGATTTTGGTTACTT 58845 37 100.0 32 ..................................... TCGTAGTAATCAATAGCAGCAGGACCATCAAC 58776 37 100.0 32 ..................................... CGGCGCACTGTATCAACAGACAAATCTTCTGG 58707 37 100.0 33 ..................................... TACAGCCAACTGCTGTTGGACCTCCTGCAACAC 58637 37 100.0 32 ..................................... TTCCTCATGATAGTAAGTGGCGAATCTTTTCT 58568 37 100.0 33 ..................................... TCAAAACTTTGCCCCGTCTTTTCGTGATACGCA 58498 37 100.0 33 ..................................... TCAGTCAAATGCCTAACTGGAATGCGAACGTAA 58428 37 97.3 33 ..........C.......................... GGTATTCTTTTGAGCAGACTCAAGCTGCTTTAA 58358 37 86.5 0 ................................CTCTG | ========== ====== ====== ====== ===================================== =================================== ================== 39 37 99.1 32 CTCTCAAAGCAGCCCCGACTTATAAGGGGATTAAGAC # Left flank : CACAGGGCCATGTAGCCCTACCGGAATTTGAAAATGAGCAACCATAAATACCAATTTTTAATTTGCTACGACATTCGCGAGCCTCGGCGGTTACAAAAACTACAACGCTTACTACGCCGCCACTGCTTAAAATTACAGGCGTCTGTATACCTATTTAAAGGTAATAGCCAGGCTGGCGAATCCCTTAGGCAACAAATTAGCCAACATATCGATCGCCGACAAGATGATGTGCGGGTTTACCAGTTAAGTCTTCACTGTTTGTGTGAATTTTACGGCCTACTCCCTTGGCCAAAGGAAATATTTTATGCCGATCTGCCCGTTTTCCGCCATCAGCCACTGATTGCACATGCTGCGCAAGCAAAGTAGACTAACACTGCTCTTTAACAATTAATTGGCACTAACACGATAGACCAAGTAGCGAGCCATTTTTATGCTTAAAAATCAATCAAGCGAAATGCGTTCAAAAACATTGATTTTAAAAATAAATTTTTTGAGTTAGG # Right flank : TTTGCAACTTATTCCTGCCAGTTTCATCTATATACCACTTACAAGTTTTTAATTGCCCTTTGTGAAGGCCTTATTCGGTATGCTTTTTACATTAGTGCATCCGCTTAAGTCACAGCGATTGACAAAACAGTGCTATTACAAGGTTTGCCCGTATGACATTAAGCCATCCACCCTCTGTTGCACTTAACCACTATATCGCCAGTGTATTACTCGAAGGAAATATCGATTGATAGCGGAAAAATCTAATGGTCGATAGATATACACTCATAACTTTTAACCTTATAAAATCATAACGTTAAAAAAAATAACAAATTTAGATATCAATCATTTTATTTGATGATGTAATCGCTTAAGCTCTGTGCTCTGGTGCTTATCACAGGGACAATTTTATAGGGATGAACATGATAAAACCGCATCAAACGTTATTACTCGCTGTCACGGGTAATTCTCCACAAATAGTCACTGAAACCTTATATGGGATATTTCAGCAACAGCTAGAA # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTCAAAGCAGCCCCGACTTATAAGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //