Array 1 165078-163705 **** Predicted by CRISPRDetect 2.4 *** >NZ_JREI01000004.1 Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000184 CFSAN000184_contig0003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 165077 29 100.0 32 ............................. GGCCAGTTCAACAAACACCACGACGCGGGAAT 165016 29 100.0 32 ............................. GGTGACGGCTTTGTCCGACCGCATCCGGGCCA 164955 29 100.0 32 ............................. ACGAGGGACGGCTGGCGCTGGAGAGATTTTCA 164894 29 100.0 32 ............................. ACCCGCTCCGCGCAGCTCGCAGCGTAATTCGA 164833 29 100.0 32 ............................. ACACATATACTCTCCCCGTTTGCATCATCAGG 164772 29 100.0 32 ............................. ATCGCTAAATCTAAAATGCCCTCGTACAGTGA 164711 29 100.0 32 ............................. CGCAATAAACGGCATCAGCTATAGCTTGATAG 164650 29 100.0 32 ............................. AAACTGCGTTTGAGTTCCAGCCGCTTTTTCCT 164589 29 100.0 32 ............................. GCCGACGACAAAATCACGGTCACAACGGGTAT 164528 29 100.0 32 ............................. GATTCGACTTTATAGGGATTGATTAGAGGAGA 164467 29 100.0 32 ............................. TTATCTATGCCATAGTGACCCCACGTTACATA 164406 29 100.0 32 ............................. TATAATTGGCGTCCATATATCTGGATATTTAC 164345 29 100.0 32 ............................. ATTGTTTCCCGCTTGCGCTTGCATCGCCGGAT 164284 29 100.0 32 ............................. CTTACTATCAGCTCGCGTGCTGTTTGCAGGCC 164223 29 100.0 32 ............................. GATGCCAAACTGGTCAAGCTGGCGATTATCAA 164162 29 100.0 32 ............................. ACCATTACTGACGTGATGGCGGCGCAAGGGTT 164101 29 100.0 32 ............................. GGAAATAAACTCCTTGAGCAGCGGCAAGCAAC 164040 29 100.0 33 ............................. TGTGAACGTCGGATAAATACCGATTCCGCCTGC 163978 29 100.0 32 ............................. AGTTTCTTGTGACGCTTCTATTCAGGACAAAA 163917 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 163856 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 163795 29 89.7 32 ............T....C....G...... AACTGGTACACCCGCCTGACGTTTGTTCAGCT 163734 29 96.6 0 ...............A............. | A [163707] ========== ====== ====== ====== ============================= ================================= ================== 23 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 182264-181200 **** Predicted by CRISPRDetect 2.4 *** >NZ_JREI01000004.1 Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000184 CFSAN000184_contig0003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 182263 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 182202 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 182141 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 182080 29 100.0 32 ............................. TGAAGAACGGCCAGCCCGTCGAGGTATCAATC 182019 29 100.0 32 ............................. CAGGCTGGTGCCATAGTTTTGAGTTTCTACCG 181958 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 181897 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 181836 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 181775 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 181714 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 181653 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 181592 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 181531 29 100.0 32 ............................. GGCGCCCGCGTTTCTCGGCTCGGCGCAATATC 181470 29 100.0 32 ............................. GTAGTGCAACGCCGGTGATTTTACCAGTATCA 181409 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 181348 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 181287 28 96.6 32 .............-............... GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 181227 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 18 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //