Array 1 952223-954325 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP083731.1 Salmonella sp. A29-2 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 952223 29 100.0 32 ............................. AGAAAGATGCGTACGTTCAATGTCGAGCTTTT 952284 29 100.0 32 ............................. ACTGGCTAATCACGGTTAACGCCGTGCCGGTG 952345 29 100.0 32 ............................. CGGCCGGACTGATTTAACGAGGGGAATTTATG 952406 29 100.0 33 ............................. TTTTATCGTCGTAGCCTATTGCTAACTTGACGC 952468 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 952529 29 100.0 32 ............................. TAATCTTTCAGCGCGTCCTGGCGGTCAACGAG 952590 29 100.0 32 ............................. TTGAGTGCCACGGCCAGAGCGGTAGCCATTAA 952651 29 100.0 32 ............................. AAAACGGGTTTGCGGAAGGCTGGAACGCCTGC 952712 29 100.0 32 ............................. GAGCGGATCCGGGATCGTCAGCACTCTGAACC 952773 29 100.0 32 ............................. CACGATTTTATGTGCCGCGTCGAGGCGTGGGC 952834 29 100.0 32 ............................. GCGACCAAACCATTCGGATTCCGTAGGGGACC 952895 29 100.0 32 ............................. ATTTCTTGCCTATAATTTCCGGTTCGACGCCA 952956 29 100.0 32 ............................. CACAGATCGCGAGTTTGCTGGGTATATCTGAA 953017 29 100.0 32 ............................. GGGAATGGCTGGATCTGGTGTTGGTTATTTGC 953078 29 100.0 32 ............................. CCGCCGCTGTTCTTCTGTGTCTGCTTTTGTCC 953139 29 96.6 32 ...C......................... GCAGTAATCCCGGGTATTCCGAGTTATATGAA 953200 29 100.0 32 ............................. GCGTCAACCAGTTCTGGCATACCCTCCTCTTC 953261 29 100.0 32 ............................. ATTAGCTGATAAATCATCCAACATGTCACTTA 953322 29 100.0 32 ............................. AGTCGCTGGCGGATGTGCGGCGCACCGAAGCC 953383 29 96.6 32 ..G.......................... CACATAACCCGGCGCGATGGCCGATACATCAT 953444 29 96.6 32 ..G.......................... CGAGAGATCATAGACCAATGGACTGAAAGACT 953505 29 96.6 32 ..G.......................... TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 953566 29 96.6 32 ..G.......................... AGTACGAGGCACTATTCGGCAAGAAACCGCAC 953627 29 96.6 32 ..G.......................... GGGGCATGTGCGAAATTTCGCTCCAGTTTGTT 953688 29 93.1 32 ..G.....................C.... GCTCAAAACTCGGATGGTATAGGCGTGGCGCA 953749 29 96.6 32 ..G.......................... GCAAGCCACAGCGCAAAAGAGGTCTATTCCTG 953810 29 96.6 32 ..G.......................... GCGCTTCCGCCAACTCTCATCCGTGAAACGGT 953871 29 96.6 32 ..G.......................... CGCCATAAACGCGACTCCGTCACACATCCGTA 953932 29 96.6 32 ..G.......................... ACGCGTTAAAACTGCGCTCAATGCAGACGGCC 953993 29 93.1 32 ..G........A................. CGGTTCGCCCGCTGCTCAGTCTCGCCGGAATG 954054 29 96.6 32 ..G.......................... GGGCATGAGTGCTACTGCTTTCAACCCGAAAG 954115 29 96.6 32 ..G.......................... ATAAATTATCGGGAAATCATAATCAGCGCCGC 954176 29 96.6 32 ..G.......................... AAAACCCTCAAATATGCGTAACGGGAGGCTGG 954237 29 96.6 32 ..G.......................... TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 954298 28 79.3 0 ..G............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 97.7 32 GTATTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGAGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.78, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 971958-973939 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP083731.1 Salmonella sp. A29-2 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 971958 29 100.0 32 ............................. TTTTTTATAAATCTGGCGAACCTGCACCCCCT 972019 29 100.0 32 ............................. CTCTCAGCCCCTCCGGGGCGCCCCGTGATAAT 972080 29 100.0 32 ............................. CATCCCCCCTCTTTTCCCCGGGTGTTTGTTGG 972141 29 100.0 32 ............................. ACGGTAGGAATATTCACGTTTTTTAAATCGGA 972202 29 100.0 32 ............................. ACGTGACCGCCGAAATGATTGCGGAAATCGCC 972263 29 100.0 32 ............................. CGCGCCCACCGTTCAGCCCTGGAAAAAGCGGC 972324 29 100.0 32 ............................. CCGCCTTCACCCAGCCCGCCGGACATCTGATC 972385 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 972446 29 100.0 32 ............................. AAATTTATGAGGAAAATTATGTCAGACAGTAA 972507 29 100.0 32 ............................. AGGAGTTGTTAGGCCAACTGTATAACGATTTA 972568 29 100.0 32 ............................. AGATGACCATCCCACCAAGCAGGCGAAGAAAA 972629 29 100.0 32 ............................. GTGCCGCTGATTTTCGTAACGCCTCAATGTAT 972690 29 100.0 32 ............................. AAAAAACAATGGTTTTACCGTCCGGCTGAACA 972751 29 100.0 32 ............................. CCGATGATCCAGAAAGTCACAAATGCGAGGAG 972812 29 100.0 32 ............................. AGGGGTTCAGGGGCGAGCGGGCGTTAAAGCGC 972873 29 100.0 32 ............................. CAGACCAGGGAGTTTCTGGCCGAACTGGAGAG 972934 29 100.0 32 ............................. ATGTGCGCATTATTGCTAACCATAGAGACTCA 972995 29 100.0 32 ............................. GGCGACGGCACAAAACGCTCAAAACTCATAAC 973056 29 100.0 32 ............................. TGTTGGCTGGTAACCACCGCAGATCGTCACCT 973117 29 100.0 32 ............................. ACCAGGGGGTTTTTTCCACGTATCGCCGCTGC 973178 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 973239 29 100.0 32 ............................. CCCTTTATCTTAGCCGCCAGAACCAGAACGCC 973300 29 100.0 32 ............................. GCCCCGATAGCGTCAACTACCAGGGCCTGCAA 973361 29 100.0 32 ............................. AATTCTTTTGCTTGCGCGTCGTTCATATCGAA 973422 29 100.0 32 ............................. GACAATCAGGGGGCGCTGGTTGACAGTATTAA 973483 29 100.0 32 ............................. TTAGTCAGGACGACTTTTACGGCTATGTAGGC 973544 29 100.0 32 ............................. CTATGAGCAACGATATCACCGCACTGGCGCAG 973605 29 100.0 32 ............................. CCGTAATGCTTTTATGTCCTCGCTTCGCTGCG 973666 29 96.6 32 ...................A......... GAGGTAAAACTAACTGGCCGCGTTGTCCGTCA 973727 29 100.0 32 ............................. TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 973788 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 973849 29 100.0 32 ............................. TGATATTTTTGGTTATTTGCGATTTAGTTTTT 973910 29 100.0 0 ............................. | A [973937] ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCTCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //