Array 1 91834-94147 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJAJA010000001.1 Escherichia coli strain 21-MO00796 contig00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 91834 28 100.0 32 ............................ TGCATGTAGCGCCACGCCGTGACCACCGTCCT 91894 28 100.0 32 ............................ ATACAGTAGCGAACAACTGGCAAGGGGGGCTA 91954 28 100.0 33 ............................ AAATACGGCATTTGATGGTTTTGTTGTCGCCAT 92015 28 100.0 32 ............................ ATTTGAAATGAGCCTTTGAGGAATCAGCTTGT 92075 28 100.0 32 ............................ GCTACAAAGCGGCCTTTTTTATGCGGTGTTCA 92135 28 100.0 32 ............................ AGCCAGAATTCTGCGGCGATATCGAGCGCTTC 92195 28 100.0 32 ............................ GAACGCGGTCATGCGGTATGCGCCGACAATAC 92255 28 100.0 32 ............................ CTGGAGGTGCTCACACTCACGCGGAGTGAGAC 92315 28 100.0 32 ............................ ACAATCAGGCGATAAACCTCACCGTTAATACG 92375 28 100.0 32 ............................ TGCACGATGCCCGCGCGTGACGCGGTGCGTAA 92435 28 100.0 32 ............................ GTGCTGAGTCGGAGGATCCGTACACAACAAAA 92495 28 100.0 32 ............................ AGACGTCAAGAACGGTAACCCGGTTGAAGTCT 92555 28 100.0 32 ............................ ACTGCCCCGACTGCGGGCCGGTGTGCGGCGAC 92615 28 100.0 32 ............................ GACACCGGATTACCCTGGTCAGCCAGGAATGT 92675 28 100.0 32 ............................ CGGCAAATTACCGCCGGGCTGACGTTTGATCT 92735 28 100.0 32 ............................ TTCCCTGCCGGTTCTCTGTATCCATGAATATC 92795 28 100.0 32 ............................ CAGATATCGTGCCGCACCGATCGTGACGAGCA 92855 28 100.0 32 ............................ ATACCGCCATCAAGTGTAATGCCCTGATCCAT 92915 28 100.0 32 ............................ ATGTACGCGAGATACGCGTGATAGAGATAAAC 92975 28 100.0 32 ............................ GTCTCGAAGGGTGAGATGCCGAATCGTGGTGA 93035 28 100.0 32 ............................ ATCAACATGACACCCGATTGTATTCAGGAATT 93095 28 100.0 32 ............................ GGTCGGTGAATCGCTGCATCGCGGTTCATATA 93155 28 100.0 33 ............................ CACTCCGAAAAATTGAGCGTCGAGCACTCGCCA 93216 28 100.0 32 ............................ TGAATTTCTCCGCGCTGCAGCGCGATGTCATC 93276 28 100.0 32 ............................ GCAAAAGCCGCCCCCATGAACGCTGCAAAAGG 93336 28 100.0 32 ............................ TCAAGCCCTGTATCAGCGTCAACCCCGAAATA 93396 28 100.0 32 ............................ TGAATACCTTTGCCTGCATAAATCGCCATATG 93456 28 100.0 32 ............................ AACTTGTAACGGCAAACGTGGGATACGAACTC 93516 28 100.0 32 ............................ CTGACAAAAATCCGTTAGGCGCGGAAATGATG 93576 28 96.4 32 .........T.................. AACTGGCGGCGGTCGCCCACCTTCCAATAATC 93636 28 100.0 32 ............................ GATACCCGCAAGCGCGGGAACGCTTTGATATT 93696 28 100.0 32 ............................ CGTCATGACTGCATTACCGACGCCGAAAACTT 93756 28 100.0 32 ............................ GATATAGCGTGAGGCGGGTCGGAATATTTAAC 93816 28 100.0 34 ............................ ACATTGCAATTAACTGATATCGCACCATCATCGG 93878 28 100.0 32 ............................ TACATACTCAAACGATTACTGAATCACAAAAC 93938 28 100.0 32 ............................ TGGTCGGCATACACGTTGACGCGGTTGCGGTT 93998 28 100.0 32 ............................ CCGGTAACTGCGTATCACGCAACCGAGGCCAA 94058 28 100.0 32 ............................ CTGAACGTTGAAGAGTGCGACCGTCTCTCCTT 94118 28 85.7 0 ....................A...C.CT | T,C [94138,94142] ========== ====== ====== ====== ============================ ================================== ================== 39 28 99.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGCTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCTCGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCTGGTAGGTTGGTTAAGTCCGTGATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGCTAAGTTATTGATAATTAGTGCTGCGGGTAGGTAAGGATAAAAAAGGGTGGCAGCAGGAGATTGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : TACGATAGTGTTAGACGTTTGGTCGTGCAATGACACTCTCAACTTCAAACCATTAGCGTTAGCACGCAATAACAATCGTAATAATTGCGATGGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTTACCAGCGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGCTGGGAATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTAGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCAGCAAATGAAGTGGATGTTGATGTCTCCTGGCTCAGCCCACAAAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 103206-104055 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJAJA010000001.1 Escherichia coli strain 21-MO00796 contig00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================================================= ================== 103206 28 100.0 32 ............................ ATTTGAGCGACGTAGCGGAAAATACGATCGCC 103266 28 100.0 32 ............................ GGGAAAAGTTTAGAAGGATTTAAAAATGGCTA 103326 28 100.0 33 ............................ CTGAAACGCATCAAGTGAATTTAACGCGTACTG 103387 28 100.0 32 ............................ TTTACGCCGTCCATCTCCCATATTCCAACATC 103447 28 100.0 32 ............................ GCCATGACGTTTACTCCAGCTCTCGTCAGTAA 103507 28 100.0 32 ............................ TGAGGAAGAAAAACCAGCAGCGCCACCGGAAG 103567 28 100.0 33 ............................ AGGCGGCGTTTGAGGAACGCATGGCGCTGTGGA 103628 28 100.0 32 ............................ ACGCCCAGCGACTGACACCGATTGTGGTCCCG 103688 28 100.0 32 ............................ GCTGGCGTAACTCGTCCAGCGTTTCGAATAAT 103748 28 100.0 32 ............................ TGCTAAATTTTTTAATGCTGCCATTTGTTAGC 103808 28 100.0 33 ............................ GTACACATTCGCAATCAAAATATATCTGCTAAA 103869 28 100.0 32 ............................ GATAATAAAATCATCAATCTGTTCGACGCCAG 103929 28 100.0 71 ............................ TCAATTTCAAACTCTGGTTTAATCCAGGCAGCTTAGAAAGTTAATTCGTATTCCTGCTCAGCGGTGAGACG 104028 27 85.7 0 ...G...A...............-C... | T [104048] ========== ====== ====== ====== ============================ ======================================================================= ================== 14 28 99.0 35 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CTTTTTATGCGCGCCATGCCCACCGCATACAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATTGAAGAAATACCAAACCGACCCTTTTTCTAGGTTGTAATGTAACTCATTGATTTTCTTATTGCTATTTTGAAGTCTGGAAAAAGGGGGTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : ACTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCACAGACGCAAAAAAGGCCGGCTAAACCGACCTTTTACTCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGA # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.18, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //