Array 1 10145-11498 **** Predicted by CRISPRDetect 2.4 *** >NZ_WMIG01000042.1 Paracoccus litorisediminis strain NBRC 112902 Scaffold42, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================================================================================================================================= ================== 10145 28 96.4 33 ......T..................... CTCGGCGGCATGGCGAACACGCGGGAACAGAGC 10206 28 100.0 33 ............................ CCTGACGCGCAGTCCTGCAAGGAAACAGGCGAA 10267 28 100.0 33 ............................ CATCAGCGTTGACAGCACCGCGTGAACCGGAAC 10328 28 100.0 33 ............................ CCTGTGGATTACACTTCTGCCAGCGATACTTTG 10389 27 75.0 33 ....-.....CT..T.T......T.C.. CCTGCGATCAGATGCACAATTCGAGGCAGATAC 10449 28 82.1 33 ..A.T.....CA.............A.. CTTCCTGTCAGGCGAGATCCCCATCAGATCGGA 10510 28 89.3 32 ..........CA.............A.. CTATCCGTGGGCGCAACCGATCCTTACATTGA 10570 28 92.9 33 ..........CA................ TGTGGAGAACCGTTATCATACGATCACGACCAC TC [10574] 10633 28 82.1 33 ..C.T.....CT..A............. CACCTACATGCCCGGTCACTGGCTCTCTGCCAG 10694 28 71.4 32 CT..G.....C.GAA.T........... ACGATCTAGTCGGCGGTCACCAGCCTCTTTGT 10754 28 82.1 32 C.........CC...A.........A.. CCGGGAAAGCGACTGGTCCCCAGCCGAGTTAA C [10757] 10815 28 78.6 32 AAC.......CC.............A.. AGTGAGTTATCCCTGAATTGCCGGAAATGAAG 10875 27 82.1 33 TA..A.....G...-............. CATGCCACTTTTCTTCGTAAATCCTGCCACTCG C [10883] 10936 28 82.1 205 ....TT.....C..G...T......... TGCAGTAAAAGAAGCCCTCATAGCTTTCCGACAGCTCTCCCATGCATATTGAGATGGCCCATCTCCGAGATCTTGCGATAGGCGCGATAGATGTCTTAGCCTCTGCGTGATGGTTCTCGGTGAACCGCTACGAGCAGCCGCGCAGGATGGCCCCCGCACATGTGGGGATAGTCCCCCAACCGCGAGCGTGCTTGCCCCGATGATT 11169 28 75.0 32 .AGC......CA..A..........A.. AGTGAGTTATCCCTGAATTGCCGGAAATGAAG 11229 27 82.1 33 TA..A.....G...-............. CGCGACGCCCTCAGCATTGACTTGGATAAGCGA C [11237] 11290 28 89.3 33 .A........CA................ TGCGGCCCTGGTCGCGAAGCTTTTTACCGAGGG 11351 27 85.7 32 ....-.....CA..T............. ACTGTGGAAAACATTTCTGCCAGCGATACTTT 11410 28 85.7 33 ..G.......CAC............... CGCTGACTTCCCATCAAGAAAAAGACTTTTCTT 11471 28 82.1 0 ..........CACC...........C.. | ========== ====== ====== ====== ============================ ============================================================================================================================================================================================================= ================== 20 28 85.7 42 GGTTCCCCCGTGTGCGCGGGGATAGGCC # Left flank : GAGTGGCAAGGAGATCAGCATTTCCAAAGGTGCCGAGATCGATGCCTTTCTCGCATCCAGGCTGCGCGGCACGCAGGTGACCCGCGAGGCGCGCTATATCGAATGGCTATCGGAGCGCCTGGCACCCGCAGCTGAGCTCGACCTCACCGCCACCCGTCTAGCCAGCTTCTCCCGCCTGCAGGTTCGTCGAAACGGGAAGAAACTTGAGGGTCCGGATGCGGTCGTGCACGGGACGCTGACGGTGACCGATCCGCTGGCGTTTTCGGAAATGCTGGCCCGAGGCATCGGCCGCCATCGCACCTATGGCTATGGGATGCTGCTCTTGCGGCCGCCGCAGCGAAGCCGTTGAGGTAGTGGGCGGCGATCGGATTTCGACGATGATGGTGAGTTGACCAAATGAGCTGAGACGGGTCAATCTTCGCGTAATACGGCAAGAGCCGCGATGCGGCTCTCCTCTTGCTTTTTGACATTGTTGGAAAATCAATAAGTTGATTACGAGA # Right flank : CCTTCTACACATCAGCCGTTACGACCCGCCTCCAGGTGCCCGACGCTTGCAGCGACAGGATCCCGTCCAAGCAACCGCCCTTCAGGGGACATTCCGCTTTCCGGATTTGCGCTCAGCGCCCCCAAACACGCCCTCGCCATTCCGGAAGGCCGGCCAGCTCATCAAATGCGTTATCAGTGGAGATCAGCGGACATGCCATCTCAATCGCCGTCGCTGCGATCATCCGATCGAAAGGGTCGCGGTGCATCCAGTCCATCGACCCGGATCTCATCGCCATCCTTGCGGTGTAAGGGGCAATGTGGAAGCCCTGAGACATGCAAAGCCCATCGAGCCGGTCCGCATAGGGGATCATCGCATCCCATTTTCCACCACGAACCTTGGTTGTGATCTCGTGAAGAGAGCATGGTGGAACATAGACCATTGCGCCGCTCACCAGCAGGCTCCTGACCTCTTGCGGCAAGCGAACCGGCGCGATCAGGGACCACGCCAACACATGCGTA # Questionable array : NO Score: 3.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.29, 5:0, 6:0.25, 7:-0.86, 8:1, 9:0.22, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCCCCCGTGTGCGCGGGGATAGGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.60,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [16-40] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 12376-13538 **** Predicted by CRISPRDetect 2.4 *** >NZ_WMIG01000042.1 Paracoccus litorisediminis strain NBRC 112902 Scaffold42, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================================================================================================================================================================== ================== 12376 29 75.9 32 .A..A......TCAA.....C........ TGGGCGCGTGAAACCGAAAGGACGGGCGCATA 12437 29 93.1 32 ............CC............... ACGCGCCATCCCAGTCACTTCTAATTCCAAAA 12498 29 86.2 175 ..C.........CC...........G... GAGCGGAAGGCATACTGATAGCGGCCCAGTGCTCGGATGGGGGGGCTGACATCTGCCAGCCGCTTACAGCCGACACCCCGGCTTCCCGGTGATGCACGCGAAACGGGAACAGCTGTAGTGTGGCTCTCCTCTTGCTTTTTGACATTGTAGGATATTCAGTGAGTTAGTTGGGAGA T [12525] 12703 29 96.6 32 ..........A.................. GGCCCCAAGCGCGTCATCACCCGGCGCAAATA 12764 29 100.0 32 ............................. GATCCGCTGGTCGTAAACGCAATCTCGATGTA 12825 29 100.0 32 ............................. CCGGGCGACACCGGGCAGGCCGAGGATCGCAT 12886 29 93.1 33 ................T........C... CCCTGGTATCAATATGGCGCCTGCGCGGCCTAT 12948 29 93.1 33 ....................A....G... CCCCCAAGAAGCTGATCTCCGTCAGGGTGCTCG 13010 28 86.2 31 ..C.....T...........-....G... CTCTCGATGACCGCATCGAGACGGCCCGACT 13070 29 96.6 31 .........................G... TGGGCAAGGATACGAAGGGCGAGGTCGCGGA 13130 29 79.3 32 T.GCT....A...............G... CAGTCGAAAAACGACCCATCCAGCCACGCTTG 13191 29 82.8 32 ..........TG...A.........G..T GTCGGTCTCGTCGCACGGCACCAGAGCGCCAA 13252 29 89.7 169 TA....................C...... ATCCGCGCCGCCCTCACCTCGGCCACCTCGGCGCTCCCCGGCCCTTATGGGGAGTGCCAAGGACTGCCGGGATCCCCCCTCCGGCCATCTGGCCATTACCCCACACCTGGCGTAACCTGCTGATGCACTCAGTGCCTGACAGCGCGAGGAAGACCCACTCGTGCAAGAC 13450 29 75.9 31 .A..G.......GATA............A CTGAGGTATCCTTGGATTGCGCTGATCGGCA 13510 29 69.0 0 AT........AGGTT............TT | ========== ====== ====== ====== ============================= =============================================================================================================================================================================== ================== 15 29 87.8 52 GGTTCCCCCGCATGCGCGGGGATAGACCC # Left flank : TGGTTGTGATCTCGTGAAGAGAGCATGGTGGAACATAGACCATTGCGCCGCTCACCAGCAGGCTCCTGACCTCTTGCGGCAAGCGAACCGGCGCGATCAGGGACCACGCCAACACATGCGTATCAATCAGGACGCTCGTCAAGAATCCCACTCCGACAGCTCATCCTCACTCATCGGTTCCATGAAGTCCGGGATCGTATTTGGATCAACGGCCCCTTCCAGCAAGCCCAAACGAACTCCACAGTGCATAACCGGGACAAGGCGCGCCGCAGGAACCCCATCGCGCGCGATCACTACTTCCTCGCCAGCGTCAACCGCTGCCAGCAGCTGAGACAGCTTCGCACGGGCCTCGGCAACATTCATCTGCACCATCGCAGCTCTCCAGATGGGTTTGTAATGATATAGGCTAAAGCCCAGCTTGCATCAAGGTTGCTACAAGCGCATCTATGCGGTGCGAGCGGCGCTGTTCGACGGTAGCCCTCGATGCTGCACCGATTTTT # Right flank : TGGATCTGCCGCGCTATCGAGGTCTCACCCCGATCCTGGGGATAGGCAATGCGCGGCCATGGCAGCGCGACCGCGATCTGACAGCGCCACCCTCCAAGACCATCACCTATGCCGACTCTCATATCCACCATCCGAGTTCTTCTTCAGGCAGGACCAGGATTGCGCACGCTTATCGGCCGCGTAGAAGTTGTAGCGCGTGATTGCCGCGTCCTGGCAGTCCTCGAGAGTTTCAAAGTCACCCCAAACCTCCCAACGGATATCCTCACCCTCGAAATAGCCAACCTCTGCAGCGTATCGGTCATCGAAAATACAGGCAGAGAGAAGCAGCGGGATGAGCAAGAATAGCTTGTGACGCATATCGGAAATCCAATCCGTGATACCGAATGCCAAGACCCGGTCCTGAAGAGCATCACTCGCTTCGCGAAAGGAATTCCGCCAGTCGCAACGGAACTTTCTTTCCCGAAGACGCCACCCATTCCTTCCAATCCTGCCCGGCATCC # Questionable array : NO Score: 3.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.51, 5:0, 6:0.25, 7:-1.14, 8:1, 9:0.26, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCCCCCGCATGCGCGGGGATAGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [15-23] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA //