Array 1 10756-12704 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMRR010000080.1 [Clostridium] symbiosum strain 1001285H_161024_D9 NODE_80_length_20670_cov_29.096, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 10756 32 100.0 35 ................................ CCGCCATTATCCGTTTTAATAGATTTCTTTTCATA 10823 32 100.0 35 ................................ GATGGTTCCGTCATCGTTTACCACAAAGCTTAATT 10890 32 100.0 34 ................................ GCTATGTTATTGAAAGATGCAGTGCTACGAATAG 10956 32 100.0 35 ................................ GTGTACCTTCTGCTGATAGGCAAGCGGTGTCTGTT 11023 32 100.0 34 ................................ ATAACCGGTTTTCCATTTGGGCGGCCGATCTTTC 11089 32 100.0 34 ................................ GTCGATTATTTTATTAGTATCTCCTTCAGACGCC 11155 32 100.0 33 ................................ CTTTCCTGTTATTCTGTTAAATCTTCAGTTATT 11220 32 100.0 34 ................................ GGAACGATGTAGCGTTCGGATACAGCCGTCCCGG 11286 32 100.0 34 ................................ TTTCTCCTTTAAATGTCAATTATAGTCATTCACT 11352 32 100.0 34 ................................ CGGTTTGATAGGTCAATACTATCCCGGTTAAGCT 11418 32 100.0 34 ................................ AAGGAACGGCCGGCCGAACCGTCCCTGTATGCAC 11484 32 100.0 34 ................................ TCGTTAAATTTTTTCTACCACCATTCATAACCTT 11550 32 100.0 36 ................................ CGAAGAATAATTTCTGTGTCATAGACAGGGAACCGG 11618 32 100.0 35 ................................ CGGCAATTCTTCCACTGTCGTATATAGTGACTGCA 11685 32 100.0 34 ................................ GTAAAATGCGCTCCATGCATCCCCGTAGGCTTTG 11751 32 100.0 33 ................................ TTTAATGCCGCCTCTTCGGATACCGTAATCGTG 11816 32 100.0 34 ................................ AAGCCCTATACCGTCCTTATTCCATATCCCTATC 11882 32 100.0 34 ................................ CTGAAGGTCTTCTTTGGTCAGAATCAAAATAGCG 11948 32 100.0 34 ................................ ATTTCCTGCGTGTCGTAAGCACTGGAGCCTTTCA 12014 32 100.0 34 ................................ TTTATATTGCTACCGTCATAGTTTTCAGGGCTGT 12080 32 100.0 34 ................................ AAACCCTTTCTGGTTCCCATAAGTGCCAAATCGC 12146 32 100.0 35 ................................ ATCAAATGCAGATACCCGGCCGCGCTGAATCCGCC 12213 32 100.0 34 ................................ TTTGATTTAGTCAGACCTTTGATTTCTGACATTG 12279 32 100.0 35 ................................ CTTACTATTCATTTCACACCTCCATGGTCTCAATC 12346 32 100.0 33 ................................ GACAGGCTTAAATTATCCTCCATCGTGAAATGC 12411 32 100.0 34 ................................ ATTTGAAACGATGATACAGTTTATTGCGCAGGTA 12477 32 100.0 33 ................................ GACAGGCTTAAATTATCCTCCATCGTGAAATGC 12542 32 100.0 34 ................................ ATTTGAAACGATGATACAGTTTATTGCGCAGGTA 12608 32 100.0 33 ................................ GACAGGCTTAAATTATCCTCCATCGTGAAATGC 12673 32 87.5 0 ..........................T..GGT | ========== ====== ====== ====== ================================ ==================================== ================== 30 32 99.6 34 GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC # Left flank : GAAATGAGGTGATGGATTTGCTCGTTCTTATAACCTATGATATTAACATTACAGAAGCCGCAGGGGCCCGCCGTTTAAGGCGCGTAGCCAAGCAATGCGTAAATTATGGCACACGGGTACAGAACTCTGTTTTTGAATGTCAGGTGGATGCAACGCAATATGTGAAGCTAAAACATCTTCTGATGAAAGAAATTGACGAAGAAAAAGACAGTCTGCGTTTTTACTCTCTAGGTAATCATTATAGCGGTAAGGTTGAGCATTTTGGCGTGCGGCGCGGAATACAGGTGGATGAACCTTTAATTTTATAAAAGAACCGCAGGGAAGATGTCTTGCCTTATCAGTGCGAACCCGAAGTGAACATGAATTCTGTGGGAGGTTCGCACCTGGATTTTGGTGTAAATTGGAGGGGATTCTGGTTTAGAGATAAAATTAAATATCATATTTGGATGATTTGAATAAAAAGTAATGTAAAAAACACTCTAAAACCATGAATTTTTGCT # Right flank : TTTTATTGGCGCAAAGAGATGTGGATTCCGGGGATAAGAGATCGGCAGATGAAATCTGTCAGCAGGAACTGAAGAATGCTGTCTGCATCACACTTAAGGAAAAGGGGGCTCAGGAAAAGGGGAGTCTTATGAAAAATGTGATCCGGACGATGGGGTATGCCCGAAGCAGTACTTCCTTAGTGGAGGCTGCTGAAAAGGGGATGAAGTATGGAAGGAAGACAGGGGAGATTGTGCAGGATGAAGAGAAGCGGTTTAGGCTGGGAAATTGACAATCTTGCTAAACTGAAAAGTGCAGTTCGCTAAGGAAGAATGATACCCGGTGTCAGAAAATAGTTTGGAGAAACTGAGTAACAACAACAGCAAAAACAATCATTCATAGCGATTAAATCACCAGAAGAATTTACCTGCACATTAGGAAATGATTAATAAATTCTTTAGCATTCAATAATACAATAATTCAAAAGATTTATTATAATGTTAGAGGAGATAAAAATCATGGA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.90,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 12488-11257 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMRR010000012.1 [Clostridium] symbiosum strain 1001285H_161024_D9 NODE_12_length_84342_cov_36.4338, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 12487 31 100.0 36 ............................... ATTCCGCCATTAGAAGGTGGGTTAGGCGGTGGCACA 12420 31 100.0 35 ............................... ATCACATGTCAATTTCAGTGAGGGAGTAGGGGCTG 12354 31 100.0 35 ............................... ATCTATTCGCTTAACCGAAAATGGTAGTAATTTCA 12288 31 100.0 36 ............................... ATCTCTCTGTTAGGGCTAGTCTAGCCCGCCCGTCAA 12221 31 100.0 35 ............................... ATATTATAGAACAAATGGAATGGAGGAATTGAGTG 12155 31 100.0 35 ............................... ATATACTAACCCCTATATTTTTACTAACAAATGGT 12089 31 100.0 36 ............................... ATACTACCGAATATAAACGGTTCGTTTCCGTCATAC 12022 31 100.0 37 ............................... ATAGTTTCCGGTGAATATTTTCCATCCTGTCCACGTA 11954 31 100.0 35 ............................... ATTGACACTTGATTTTGTTTTTGCCATAACTTTTC 11888 31 100.0 36 ............................... ATCCAGAATCGCCAGGATGGACGGGATGTACTCGTT 11821 31 100.0 36 ............................... ATTTCATCAGTATGATATAACACGCCATCCACTTCC 11754 31 100.0 36 ............................... ATTATTTGGAGGGAATCCACCTGGTCATCTATCCAC 11687 31 100.0 35 ............................... ATTTCTTAGGTCCTGCAGCTTAACGCTTTCCAGCG 11621 31 100.0 37 ............................... ATTTCACATACTCCACAGCCGCTTTTTGGAGGATGGC 11553 31 100.0 35 ............................... ATGGAACATGTTCCATACATTCTTCCCATATTGCT 11487 31 100.0 36 ............................... ATCCTGCTGTCCCTGCACCTCAATCATTGTCTGCAT 11420 31 100.0 36 ............................... ATTCCCCAATCACAGGCACAATCTTCACCGTCTGTT 11353 31 93.5 35 ...A.......................T... ATGTCGTCGGCCGTTCCCGGAAGGCCGTCAGCTCT 11287 31 90.3 0 ..........T................TT.. | ========== ====== ====== ====== =============================== ===================================== ================== 19 31 99.1 36 GTCGAGGCTCGCGAGAGCCTTGTGGATCGAA # Left flank : TTGCTGGAATTGTTCCAATGGAAATCAAGTGAGGAAGCGGTAGAAAATAATCTGGATAGAATGAAGGATGAAATTGCTGATATCTTTATATATCTGCTTATGCTTTCGGATGATTTGGGGTTAGATCTTTTCAGTGCAGTTACTGAAAAAATGAATAAAAACAACGGAAAATATCCAAAAGAGTTATGCAAGGGGAAGCGTGATAAGTATACAGCCTATTTAGAGTGAAAATTAAACATAAAATTTCATTATTACATTGCTTGTTTGAAAACTGTAGGGTTAACTATGGGTTGATTTGATGGGTATTGATCTTTAGTAAGAAGAACCAAGTGCGAATAGTAGTTGTACATAAAATCCCAGGGAGATTCGCACTACAATTGGCCGGAAAATACTATTAAATTACGCGAGGAAATTTCAACTTGATAAACGATTTGTAGAAGATGTATAATATGAAGCATGTAAATGTGGCATAGATGCAAGAATAATTGTGCATTTTTGCC # Right flank : GTTTTACAGGTGGAATATACTTTTTTATAGACCTTGTAAATAAAATCGCTTAATTTAGATATGCTTCACTTAGTCTGTTCGATGACGCTATCAAAGCCATATCAATTCCCCCACCAAAACTAATTCAAAATAATGATTGACTTTTCAAACTGTAACAATTATACTTACAGTAAAGAGAGCAGAACATACATTTCCCAATAATAATAATATAACTAACACATAAAGAAGTATCAGAACCCACTTATCCATCAATAATATATACATCATTTAAAGGGAAATCCCATCTAATAATTGCAATACCACATTATTTATGAAGATAAATAATCGAAGGCCATAATAAAGATATGCTCAGGAAAGAAGGTATATAAAAATGGTAGCAAACTTAAAATCCAACACAGAACCTAATCCGAAACCAGACGATAGCCAAAACTCGGAGATAAGCAAAAATACGAATAATGATATCATACCCACTCAAAAAACTAACATAGAAAACACGACAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGGCTCGCGAGAGCCTTGTGGATCGAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGAGGCTCGCGAGAGCCTTGTGGATCGAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.00,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 14277-13235 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMRR010000012.1 [Clostridium] symbiosum strain 1001285H_161024_D9 NODE_12_length_84342_cov_36.4338, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 14276 33 100.0 35 ................................. CTTCAAAAGCGGCACTATCATGGCACTGATAGAAG 14208 33 100.0 35 ................................. GCCATTTCCTGTCGGTCGGGCTGGTCAATCGTGCC 14140 33 100.0 34 ................................. ACGATATAAGCGGTACCTAAGTTTGTAGATAATC 14073 33 100.0 33 ................................. TCCGTGAGAGCCGCCAGAATCGCAGTTTATACG 14007 33 100.0 33 ................................. ACCCTGACACCAGTTGCATATAAAAATTCAATC 13941 33 100.0 34 ................................. CCCTTTATGCACGTATATCCGCTGTTGCCAGTAC 13874 33 100.0 34 ................................. ACTTGCCAACGTTATTAAGTCTGAATATGGTGAT 13807 33 100.0 36 ................................. GATGATGGACAGTAATTCATTCAGGAGATACCAAAC 13738 33 100.0 35 ................................. TCCTGGAGCTGGAGCTGGTCGAGATGCTTCAAGGA 13670 33 100.0 34 ................................. ATCCAGCTTGAAGACATCCTTAATTTTCTGCCAT 13603 33 100.0 34 ................................. TTTTAGTACGATATCGCTTTACGTGCGTCTCATA 13536 33 100.0 34 ................................. CGTACACCCAGACGGTAAGTGTGCCAGGAGCTAC 13469 33 100.0 34 ................................. TACCTTGTAGCTGGCGCAGACGCTTCTCCAGCCG 13402 33 100.0 35 ................................. AACCGCTTTTTTATAAGCAGAAGAGGGGGCTTGCC 13334 33 100.0 34 ................................. GTGTATATTCTTCATAGCCTTTTAGCATATCATC 13267 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 16 33 100.0 34 GTCGAGGCTCGTGAGAGCCTTGTGGATTGAAAT # Left flank : ACAAGAAACTTGAGGCTTATTTTAAAAGTAAAATGAAAGCGTAATAAGAGAAGCTGATATTTGGAGATAGGATTTTATCTTAAGCGGCTTTAAATTAGTGTGAAGCGCGGAATTATAATCTGTTATATACTTTGTTCATATAAAAAATATAAACATTTATGTAAATACATTTGAATTCTTCGAGCGTGATAAAACATAATAAACTGCTGGGTACACTGTTAACTGCGACCGCCATTTTAAATGATTGTTTAGGATCGTACGGGAAAATTTAGCACATATGGATAATGGAGGTAATTTAAAAGAGGGTTGATTTTTAGTAAGGAAGCTCTGGTGCGAATAATAGTTGCACATAAAATTCCAGGGGGATTCGCACTGCAAACGGCCGGAAAATAGGATTAAAATACGAGAAAATTTTTTGACTTGCTGGATGATTTGTTGAAGGTGTATAATTAAGATATATAAATTTGGCATGGATACAAGGATAATTGTGTATTTTTGCT # Right flank : TCAACGACTGGAAGTTGGAAGCACTTATGTCGACTATACATCTTTACTACTCACCTCGAAATACTCTATAATTCCCAGTGTTACAAAGAAAATATATTTAAAAGGGAAGGGGAAAGCTGCTATGGCAAAAGATATTAATATTCAGGATTTAATAAACAAGATTAATAAATTTAGAGAGGAAAGAGATTGGAGAAAGTTTCACAATCCTAAGGATTTATCAATCTCCATTTCACTTGAAGCATCAGAATTGCTGGAATTGTTCCAATGGAAATCAAGTGAGGAAGCGGTAGAAAATAATCTGGATAGAATGAAGGATGAAATTGCTGATATCTTTATATATCTGCTTATGCTTTCGGATGATTTGGGGTTAGATCTTTTCAGTGCAGTTACTGAAAAAATGAATAAAAACAACGGAAAATATCCAAAAGAGTTATGCAAGGGGAAGCGTGATAAGTATACAGCCTATTTAGAGTGAAAATTAAACATAAAATTTCATTATT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGGCTCGTGAGAGCCTTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGAGGCTCGTGAGAGCCTTGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.00,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //