Array 1 440091-438586 **** Predicted by CRISPRDetect 2.4 *** >NZ_VOIJ01000001.1 Bacteroides fragilis strain AD126T_2B NODE_1_length_754196_cov_54.970794, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ===================================== ================== 440090 35 100.0 35 ................................... ATAGGATATTCCCTTTTTAAAGCGGGTCACACGAA 440020 35 100.0 35 ................................... AAAATTAATAAATAAACTTCCATAGCTTTTATTTT 439950 35 100.0 36 ................................... GATTATGATTAATTTATTTTCAATTTTCAGATCATG 439879 35 100.0 33 ................................... ATTATTCAATTCAGAACAGGCATCAAAAATTTT 439811 35 100.0 37 ................................... GCTCTTTTTAACCTGTTTTGCAGGATGCTTAATAAAT 439739 35 100.0 33 ................................... CAAAGAACGGATAACCCCACACCACTGTCCAGG 439671 35 100.0 36 ................................... AATTCCACGGATAAGCAAACACCTTGTCACCTAAAA 439600 35 100.0 35 ................................... GATATTTTCAATCATATCATCCGTTTGCCGATACT 439530 35 100.0 35 ................................... ATAAATCATTTAATTAAAAAACATTACTATAAAAA 439460 35 100.0 33 ................................... ATAGTTATTAGGTCAGAAACAGCTCCCGTTTTT 439392 35 100.0 37 ................................... CATATATATCATAATTTCTGATGTCTCTTTTGCTGAT 439320 35 100.0 35 ................................... GAGCGTCCAGCATTTCCGATTCAACGACTAAGAAA 439250 35 100.0 34 ................................... TTTGGAGCATTGTCTATCATAAAAATTCCGTAAT 439181 35 100.0 34 ................................... AAGCCATCCCTGATGAGTTTTGCGACAGGAAAAA 439112 35 100.0 37 ................................... TTAACATGCTCTGTTGCGGTGTTCTGGTAAAAGGCCT 439040 35 100.0 33 ................................... AACTCGGCATTGGTTAGGAATTCTTCACATTTT 438972 35 100.0 37 ................................... GAAAATCAAAGTTAAATTTTCCTTCTACAAAAACTTT 438900 35 100.0 33 ................................... ACGCTTTTTCCAGAAGCCGGTTACGCCAATTCT 438832 35 100.0 36 ................................... ACAAATTTCTAAGAACCAGAGACTGTGCCGCTTTGT 438761 35 100.0 34 ................................... AAATATGCCTGGGTACGCATATTAATTGTGTCAT 438692 35 100.0 37 ................................... TTTCCTGTCCCGGTGTGAGCTTGACGCGAACTTTCAT 438620 35 97.1 0 ........A.......................... | ========== ====== ====== ====== =================================== ===================================== ================== 22 35 99.9 35 ATGTAGATGTATTCCAGTATAATAAGGATTAAGAC # Left flank : TTATATATCAACCTATACGAAAAAAGATAATTAAAACCGTCGAAATAGTCTAAACCTCTTGCGAAAATCAGAATTTGTTTAATTCATTGATTTTCTGCTTATTCTTTTAAATGAAAAATAATATATAATGTATAAAAGCTACGAAAGAACTAGCTTTTTTGTATATTAGTAAATCATTTGCGAAAAAAAACAAATAAGCAATTCGTTCTTTGACATAATACAGTTATTATCTGATAATTATAAATATAAGATTAATCTTATTTTCGAAATAGGCTATAATATAACAAATGAAGCAGGCATTTGCGAATAATGAATCGATCATATCAAAGTGATAATCAATTAAATATCTCTATATTCTACAAATTATTTATTTAAATTACAGAAAAAAAGAGTACATTTGCGAAAATCAGTTCAACACTTCATCTATCTAACTGAATAATAAGTTATTATATATTTATACAGATAGAATACATATTTTATAATAATCTGATTATCAATAT # Right flank : CAATGCCCAGAAATACTGCAAACTTTCCTTATTAGCATGTAGATGTATTCCAATATAAAAATTTAACTACATTAAATAGAATAAGGGGAGAAGTTCAGACATAACGGCTTGGATAAGATCGTCATGGACTTCGGTATTGCTTTTAACATTGGGAAAATGATCAATAAGCAGGAAAAGAAGAAGAGAGGCAGAACTAATTTATTGGTAACTATTTTAATAAGCTGTGGAATAGCTTACCAAAAATACACAAAGGCGATAATACTACGGGGCTGTCCAAAAAGCAAAGTGCCCCCCAAAAGTCGGATAGCCCCTTTTACCATTGTTTATTTCGGTGAAAAGCCTCATATTACCGTTGTGAAAAATTAACAGTAATAGTTAAGATAGTATTTAGAGAGTTAACCTCCAGCCAAAATGTTCTTTTCCGGTTCGTTTATCGGAAAAAATATCTCCCAACCATCTTGTTCGTGTTGTAAGTTACATTGTAGATGCTTTGGATATTA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTAGATGTATTCCAGTATAATAAGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 1 949-2528 **** Predicted by CRISPRDetect 2.4 *** >NZ_VOIJ01000008.1 Bacteroides fragilis strain AD126T_2B NODE_8_length_223458_cov_73.813514, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 949 47 95.7 30 ...A......A.................................... GATTCGAAGATATGCAAATGTAGCAAGTAT 1026 47 100.0 30 ............................................... AAGTACAACATCGATACCGATACCCTTTCC 1103 47 100.0 29 ............................................... GATCGTGTTTGCGGAGCATTACCAAGAGG 1179 47 100.0 30 ............................................... TTTATCATACACTTTAAACGTGACAGTATC 1256 47 100.0 30 ............................................... TGGAAACTTTATCTATCATACAACCAAAGA 1333 47 100.0 29 ............................................... GCTATGTTTGTCGGAGCAGTAATAACGTC 1409 47 100.0 30 ............................................... GTCGAGTCCTACCGTAAATTTGGTGTATAC 1486 47 100.0 29 ............................................... GGATTAATTTTAAACCAAGAATAAGTTAA 1562 47 100.0 29 ............................................... AAGTTTATTGAGGGTCTTTCTAACATTGT 1638 47 100.0 30 ............................................... TTCGTATCAATACCGATCTGACGAACATTA 1715 47 100.0 30 ............................................... CGAACGGACAAAATTACGCTGCTCAGGTTA 1792 47 100.0 29 ............................................... CCGCCGGAGGCATTATAAAGTTGTGCATA 1868 47 100.0 30 ............................................... GTTTAGCGCAATAATCATAGAAAGAATGAA 1945 47 100.0 30 ............................................... CCAAAGATCTTTGTTCCAATTGGCATAACG 2022 47 100.0 30 ............................................... AAGTATGAAGATAAGAAGAATCGATAGGAG 2099 47 100.0 29 ............................................... GCGGAGAGAGCCAAAAAGGGAGGCGAACG 2175 47 100.0 29 ............................................... CTTTTGGCAATATCGCCAATCATAACCAA 2251 47 100.0 30 ............................................... GGCGCCGATTGCAGCACCAATCATTCAGTA 2328 47 100.0 30 ............................................... CAATTGACCTGACAACTGTGCATCCAATTC 2405 47 100.0 30 ............................................... GAATTTCCACCCTCTTAAAAGGAGAATAGG 2482 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 21 47 99.8 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Left flank : TTCAGGGGCGGAAAGAACAAAGCTTTGGCTTCGAAAAGACTTGTTATTTGGAAACAAAAGGTTTGATTTAACAGAGGGTTAAATCAAGTTATAGGAAGAGGAAAAACAAAAGGAGAGAAAGTATTGAGGATGAAGAAAATAGAGAAAAAGGGAGTATTTTCTGGGAAAAGGGATAAGTGCTGGTCCGAAAGGGATAGTTGTGATTAAAGCAAGTATGGGGGCAGGGAATTTTAAAAAGCAAGGTTGGGAATGGAAGCGGGAGGAGCTTACTGTTAAAGACCAAAGGACAAATTACAAAATATTATCCAATTAACAAACCGATAAACAATCTATTAAATGGTTATTCACAATTCGAAACAGCTTCTAATGGTAACTATATTTAAACCGTCTAATCAGATACACTTAGTAGCATACTTTTCAATTACTAAGTAGAGTACTTTTTAATTATTATCTACACCATCATAAACAGCATATACTATCTGATGAAGACAAAGCGATGC # Right flank : CTTACTCCGCATAACATAATGTTCTTCAACAAGTTAAGAATAAATTAGAAAAAAGAAAAAGAAGACTGTTTCCAACACAAAATCTCGCATTAATGCGAGATTTTGTATTCTAGAACAACTCCAATTGCTGTCCCGGCGTATTGACATCTTGCACTTTCTTTCCATAAAAAAGCTCTATATCTCCAAATTGTTTATCTGTAATACACATGATTCCGACATGCCCAAATTCTGGGAGAAATGATTTAACTCTTTTTATATGTACTGCTGCATTCTCACTACTGCCACAATGACGCACATAAATGGAAAACTGAAACATCGTAAAACCATCCTTTTGTAGATTCTTTCTGAAATCGGCATAAGCCTTTTTTTCTTTCTTAGTCTCAGTTGGCAAATCAAAAAGAACAAGCACCCACATAATACGATATTCATTAAAACGATCCATAATCTATCGTTCGGGATAGGAAATTCTCCGAAGCTCTCCATTGAAACATTTATAAAGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //