Array 1 63852-63275 **** Predicted by CRISPRDetect 2.4 *** >NZ_NKOP01000023.1 Escherichia coli strain MOD1-EC1690 MOD1-EC1690_23_length_80566_cov_45.8438, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 63851 29 100.0 32 ............................. CCGTTTGATAGCTGTTCACGCTGGCTGATGCC 63790 29 100.0 32 ............................. CTTTCCTACTGAATCCGCGTCGGTTGCCTCTG 63729 29 100.0 32 ............................. AGCCAGACACATTGCTTTATCGCGCCACGCTG 63668 29 100.0 32 ............................. GCCATAGACTTTATTAACTTCATTGGGGGTTA 63607 29 100.0 32 ............................. CGTATCACAACCGGCCTCAGTACGTATCAGAA 63546 29 100.0 32 ............................. AGGGGCAGGGAGTGACGCTGGAGCAGGCGATC 63485 29 96.6 32 ..........................C.. CAGGGAAACCGTTCGTACTTATCGACCTCAAC 63424 29 96.6 32 ..........................C.. AAGGGGACGGCTACGGGACGCCGCCTATTGAC 63363 29 93.1 32 ............T.............C.. GACGCACTGGATGCGATGATGGACATCACTTG 63302 28 72.4 0 .A.........C..T....T-.G..C..C | ========== ====== ====== ====== ============================= ================================ ================== 10 29 95.9 32 GTGTTCCCCGCGCCAGCGGGGATAAATCG # Left flank : ATCGAGGAAGTGCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGCGATAGCGGTCACCGGGGACGCGGCGGATGAGTATGGTCGTCGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGATCGCGATCTGGCTCCTGGAAGTGCGTGCCGGTGTTTATGTCGGAGATACGTCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTGGTAATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGGTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : CAGCTCTCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCATCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAATTAAGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTTTCGGTGTCACTCATCCGCT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAATCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 199415-200663 **** Predicted by CRISPRDetect 2.4 *** >NZ_NKOP01000003.1 Escherichia coli strain MOD1-EC1690 MOD1-EC1690_3_length_210278_cov_44.4846, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 199415 29 100.0 32 ............................. ACATTGACTGCCCGTGGCGTCCCCGCGACCTT 199476 29 100.0 32 ............................. AGTTTGTCGAACACGGAGCGGAGCATACCCGC 199537 29 100.0 32 ............................. TGCACGCCCTGCCGGAATCTCCCCTCGCTCTC 199598 29 100.0 32 ............................. AGTAAGCCGGTTGATTATCGCCAGGGATATTA 199659 29 100.0 32 ............................. GCGACGGTACCTGTGCGCGCTGAATAAAATAA 199720 29 100.0 32 ............................. GGAAAATAAACGCGTTATTCCTTGATGGGTGC 199781 29 100.0 32 ............................. AGCAACAGGTATTTCATATGGCCTGCCGTGCT 199842 29 100.0 32 ............................. GCCAGCGGCGCTGAGTACGACGACCTGATTAA 199903 29 100.0 32 ............................. TCAATACAACAGCAATGCTGGAGCTGGAAAAA 199964 29 100.0 32 ............................. TGGGCGCAGCTCATGTATTCCAATGAGGATAT 200025 29 100.0 32 ............................. AGATTCGCGCAATGTACGGTAAAGACAGCACC 200086 29 100.0 32 ............................. CCATTCTTGTTGTCGTTCATCAAGCGCAGGGG 200147 29 96.6 32 .....T....................... GTATTGCAGAGCCTGATGGGGCATAAGTCGAT 200208 29 100.0 32 ............................. ATTTAGATACGGCACACAGGAATGCGCTGGAT 200269 29 100.0 32 ............................. GGAATAATTACCGCGCTGATTAAATTAATTAA 200330 29 100.0 32 ............................. CATGGGAGTCCAGATTACAAATTCCAGAATGG 200391 29 100.0 32 ............................. CGCCAGTCTGAGGTTTTCCGGTCATACATCGT 200452 29 100.0 32 ............................. ACCGTTGCTACACATATGATCAGGCATGTGCC 200513 29 100.0 32 ............................. GACGATGAGACGCCCTGGTGTGCCGCGTTCGT 200574 29 100.0 32 ............................. CGTTTAGCTCCGCAATGTTGGATATCACTGAT 200635 29 89.7 0 ...........A........A.......A | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.3 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAATTGCTTGCGACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATTACACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTCTTTGTCGCCTCTAAAAAACCTCCATTTTGCCCATCCTGGACTAATCATTATCATTTTCTACAAATTCTGTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTACGTCGGAGTTTGGTGGATTTTAGTCGGTATAGAATTACTTTAAATATTTGGCTTTTCAATCAATGAATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGTTTCTGTTAAGTTGGTAGATTGTGACTGACTTAAAAAATCAATAATTAATAATAGGTTATGTTTAGT # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTCGTATTAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGCTCTCCATATATGAGAAGTTCACAATTATCGATACAAAAAATCAAATTTAATCAAAGTGTTATTTGTATAATCCTTAAACCGTTAAGAAATTTTAACATATTATTTTTTTAATATTAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTGTATTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGGAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAATCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //