Array 1 281054-282219 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP010064.1 Enterococcus cecorum strain SA3 chromosome		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                      	Insertion/Deletion
==========	======	======	======	================================	=====================================	==================
    281054	    32	 100.0	    33	................................	AACGAACTCTTTAATAGTAGATATAGAACGTTT    	
    281119	    32	 100.0	    35	................................	ATCATATCAGCATCAAAATATAATCGATAGCCATT  	
    281186	    32	 100.0	    33	................................	ATAATAAAATTCCTCCTATTAAATAAAATTATT    	
    281251	    32	 100.0	    35	................................	CCTACTGCAAGACATACGAAACATGGATAGTGATC  	
    281318	    32	 100.0	    34	................................	AAGTTGGTAGCGTTGATGACTACCGTTTGACTAA   	
    281384	    32	 100.0	    35	................................	TCACTCATCGGTTACCACCTCGATGTCAGCAAAGT  	
    281451	    32	 100.0	    35	................................	AAGATCAGGGCAAAATTGTGACTTACGATATTCGC  	
    281518	    32	  96.9	    37	T...............................	CTTGATGCGGCTATGATGAAACGCTGCGACCATCACC	
    281587	    32	  96.9	    34	..T.............................	GTTTACTTTTCTTCACAGGCCTGCGCATCAACGA   	
    281653	    32	  96.9	    35	......................A.........	CATTAGCACTACTGGTCTGAGTCGATTGCCCAGCT  	
    281720	    32	 100.0	    34	................................	CAAAAATCTGCATGATAAAGTCGCTAACCGCTTG   	
    281786	    32	 100.0	    36	................................	AACGAATTTAAAAAAGAAATTGGAGGGGAAGTAACA 	
    281854	    32	 100.0	    36	................................	TAAATGGTTAACTTTATACATAACAGACTTTAGAAT 	
    281922	    32	 100.0	    35	................................	CAAATACGGTTGGTCTTGTTAAGATGCCGCCTTTT  	
    281989	    32	 100.0	    35	................................	TAAAAAAGACGGCACATCCAAATGACTGTCTAAAT  	
    282056	    32	 100.0	    35	................................	TTCAACATATTCTAATTCCATTCGTCGCTTAGCAA  	
    282123	    32	  96.9	    33	.............C..................	TAGTGAAATACATACCAAAAAGTGCATTAAAGT    	
    282188	    32	  93.8	     0	A............C..................	|                                    	
==========	======	======	======	================================	=====================================	==================
        18	    32	  99.0	    35	GTCTCACCTTACATAGGTGAGTGGATTGAAAT	                                     	       

# Left flank :   CAATTACTTGCAAAATCAATTCGTGGTGATATTTCAGGTTATCCCCCTTTTCTCATATAATTTGGTGATAACAATGATGGTATTAATAACATATGACGTAAATACAGAAGATAGACATGGAAGAAAGAGGTTGAGGAAAGTTGCAGAATTATGTGTTGATTATGGACAAAGAGTTCAAAATTCTGTTTTTGAGTGTTCTTTAGCCCCTGCTGAGTATGTTGAAATTAAAGAAAGACTATTAAAAATAATTGATGAAACAACGGATAGTATCAGATTTTATAATCTCGGGAAAAACTGGCAACATAGAGTTGAAAAAATAGGATTTGATAATTCGTATGATCCAGATAAAGATTTGTTAATTTTTTGAGTTGAGCGAACCTATAGTGAACAGAAAATCATATATAGGTTCGCCTTAAATAAATGATATTTATCTAGATTTTTATCAATTATCAAAATGGTTATCACTTATAATTATGTTATAAACTGCGCTATTTCGCGCA
# Right flank :  TAGTTTTACTGATACCACATCATTAAGAGTACAATTTGAGAATTATGTAGACCAACCTCCCCAAGCTAAGTGACTTTTGTGAGGTTGGTTTGGTTGGGTTATTCTGCTAGTTTGACGATTTGGGTGCCGTGGAGTTCGTGGATGCCAAGTTGGTGGGCGATTTCTTCGGCATTTTCGTAAGTGATTTGTCCGCCTGGTAAGATGGTGATGCGATCAGCTGCATAGTCAATCAATTCTTTTAAGCGTGGGAGAGTGTCTAAGATGGATTCACTCATTGGACCACCATGGGTAAGGATACGATGGACACCGTGATCAGCTAACCAGTCAATGGCTTCAAATTGGCGTTCGACGGGTATTTCGTCAAAGGCCATGTGGAAAGTAATCTGTAAACCTTCTGCGACTTCAATGAGTTCTTCCATCGCCTCTTCGTCAATCCAGTTACTTGGAGTCAGGCAACCAAAGACCACGCCATCGACACCAAGTTTTTTTGCTTCAATCAG

# Questionable array : NO	 Score: 9.21
# 	Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCTCACCTTACATAGGTGAGTGGATTGAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         F Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:59.38%AT]
# 	Reference repeat match prediction:         F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 93% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-3.40,-2.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-3] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [9.78,0   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
//