Array 1 44898-44645 **** Predicted by CRISPRDetect 2.4 *** >NZ_POVH01000002.1 Staphylococcus schleiferi strain 196 SC196_S12_L001_Assembly_Contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 44897 36 100.0 36 .................................... CATCAATCCTTTTCTTTTGTTATTTTAATATTAACA 44825 36 100.0 38 .................................... TGAGTTGATTTGATTGTTTTGTTTTTCCATTTAAATTT 44751 36 100.0 35 .................................... GTTGATTTATCTGTTGTAATGTTTTTAGCGTTTGA 44680 36 94.4 0 ..................................GA | ========== ====== ====== ====== ==================================== ====================================== ================== 4 36 98.6 37 AATCAGATAGAGCCCCGTACAAAAGGGGACGAGAAC # Left flank : AAATGTATGATAAAGAGACATTGGATTTCATGGGAAATCATATAAAGATCGTTGATTACAGATTAAAGAGCACTCGTTTTCATTTAGAAAAGGTGAAAATACCTTCGTTTATGGGCGAATTCACTCTAAATATTACTGGGCCATTGCCATTTTTGCAGTTAACACATTTTTTATTAAGTTATGGTGAGCTTTCAGGTGTAGGAGTAAAAACCAGCTTAGGCATGGGTAAGTATAGTATTATAAAGAGAAGAAAAAAATAGAAATGTATAGCAATAAGATTTATATTTAATAAACTCTTTGATTACTGATGAACACATCTTAAGTTCGTAACAAGATTAGTTCTATAAAAGTAGTGTATAATTTATTATGGAGATAATGTAACTTAAATATAATGACCTAAAAGTGGACATCATTGTGTTATGGCAATGAGGTTAAGCCCATCTTTTGGACCAGTATTTTATACTCCTATGACTGTAAAATATGGATTTATACAGTTGACT # Right flank : TTGAAAACAAAAAGTTTTTCTTTTAGATCATCATCAATGAGAGAATAGCCATACAGAAAGCTTTGTGTTTGATTTGATATGTTGATGTTGCGTTTTAGCCATCTTCTATAAAATATAAAAATAAAAACTGGGCAACCGTGTGCCCAGTTTTTTGTTCAATATTTATTCGCGTTCTATGTTGAGGGGATGGTTCTTTTATACATCTCATTTGATGATGCCAATCCCCAATGAGTGATACAACTATTTGTATGCTACTGTGAGCTGTGAGGACCTCACTGTAACTATCCAATTTCTTAATTCATAGTCAAACCACCATCAACAGTAAAGTTTTGTCCTGTAATCCCTGAAGCTTCTTCAGATGCGAGATAAGCGACGGTATTGGCAACATCTTGAGGTGTTGTCACCCGTTTTAAAGGTGTCGTTTTTGCAATTAAATCAAATACCTCAGGGGTTGTTACAGCGCTCGCATCCGTTGTTTTGAGTAGTCCTCCTGAGACAAC # Questionable array : NO Score: 2.79 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCAGATAGAGCCCCGTACAAAAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,15] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 1 61687-62120 **** Predicted by CRISPRDetect 2.4 *** >NZ_POVH01000006.1 Staphylococcus schleiferi strain 196 SC196_S12_L001_Assembly_Contig_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 61687 36 100.0 30 .................................... ACGGTTTAGTTAATGCAGACTATAATCGTC 61753 36 100.0 29 .................................... TCAATCTATAAAGAAAAAAGAACCAACGT 61818 36 100.0 30 .................................... CACAAGGTAAACCAGTTACTTATCGTGTTA 61884 36 100.0 30 .................................... TAATCGATGCTGCTAGAGCTATAGGATTAT 61950 36 100.0 29 .................................... AGCATAAGGACGGTAGTACCTCAGTACGT 62015 36 100.0 30 .................................... CCAGTTTAATGTTTGTTTCTATTCTTGCGA 62081 36 80.6 0 ..............C.......T.A......C.CGG | AA,CT [62102,62111] ========== ====== ====== ====== ==================================== ============================== ================== 7 36 97.2 30 GTTTTAGTACTCTGTAATTTTAGGTATAAATGAAAC # Left flank : ATTATATTAGAAATGAAAAGCAATTATTGACAGCAGAGTTTATTGATCACTTGGTGTGGGATGCACCACTTAATTTTGAAAAGCATGAAATTAAACGTAGCTTAGAAAAAATTATTCAATTATATCAAGAGGTCATTGAATTAACTCCGAAGATTTCAAATTATAATTTAGCTGATATCATTGTGTTTGAGCCAATAGATATCTATGTTGTCGTAAGATACCTTAAACATGCAAAACAAGATTTTGAATTGGATATCCATTATGATAATTTACCGATTGCTGTAGCGAAATATATCAAAATGTATGATTTGAAGTTTAATAAATAAATCTAAACGCCTATTAAAGGGAAAGGTTCTAGCGCTTGGTCAATTGACTTGTAAATCAATCGATTAATCAAGCGCTTCTAGATTATTTTAAACAAAATTAAACGAAAATTTAAAAATGTCTAGCATAAACTTGCTTATAATAATCATAAAAATAAGCTATAATTATAGCTAGAG # Right flank : GATTGTTATAAAATTTGTTTATAATAAAGACAGAGATGTTTTCTAAGATACCTCGTGCTTTTTATTGATTGTATAGCACAAAAAGGCAGAGAAAAATTTGTGAATGTTTTTAACATTTGATATTAAAAAGAGACAAGAATCTTAATTATGATTATAACTATGTAAATGATTATAAAACTTGTATCTTTATATGTAGTACTGTAAGTTTAGTAAACAAATTAGAACAAATTTTAAAATTGTTCAAGACTCATATAATTCAATATATGAAAAATACAATAATACTAAAATCAATTGACAAGTATTCTTGCTACTGGCAAACGTTGTGACATAAACAATACGGTAGCTTTGTCTATAAAAGTATAAGCTCATTGATGTGAATCTGCTATATACATCAATGAGCTTTTATTTTTAAAGTACTTGTAGAATGAATACACTAAAATTCAGAATTTAATTATTATGTTCAATATTGTTAATTACTTGTTCATATGATGTATTTGAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTAATTTTAGGTATAAATGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: F [matched GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.60,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [76.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //