Array 1 761929-764825 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP079819.1 Rothia aeria strain LPB0401 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 761929 29 100.0 32 ............................. AACACCAGGGCCTTATCCAAAATATTTTCCTC 761990 29 100.0 32 ............................. GATCACAAGTATTACACCCGGAAAACCGCGAA 762051 29 100.0 32 ............................. AACATATAACCCACCGAAAAAGAATGTGATAT 762112 29 100.0 32 ............................. TGGGGGTACCCCCAAAAGCTGGAACGCCTGGC 762173 29 100.0 32 ............................. GGTAGCGCCCACCGGGTGCGAGAGCGACACAA 762234 29 100.0 32 ............................. CGGCCCCGACCGTCGTTTATCACCGGGCTTTG 762295 29 100.0 32 ............................. TAGAGGCTAAAGTGCCCGGTGGGCCGGGCGGC 762356 29 100.0 32 ............................. CTGCCAGAGGTGTTAGGTGACGCGCTACAGCT 762417 29 100.0 32 ............................. CGAGGAACTTACCCGTAATACTGTCAATAACA 762478 29 100.0 32 ............................. AACAACAACCTAAGGAGCCAAGAATGGCACGC 762539 29 100.0 32 ............................. TTGGCATACGTGTGCGCCCCGGTTCATCCTCA 762600 29 100.0 32 ............................. TGGCGCAACGGTGTAGGGCGAGGCCCGAGCAT 762661 29 100.0 32 ............................. AGCCCGTGAAGATACACTTAGTGCCCTTAATG 762722 29 100.0 32 ............................. CGCCTCGGGTGGGGGTGTGAGTTTTACTCACC 762783 29 100.0 32 ............................. AGCCGTGTCGTGCCCCGTGGCTGGGGTGCTAG 762844 29 100.0 32 ............................. TTTCATGGAGACGCTAGACGCGATCAAGGCAA 762905 29 100.0 32 ............................. CACACGCGGCAATGAACAAACGTGCACTGAGA 762966 29 100.0 32 ............................. GTCACTGGGGCCGAGGTAGCTAGGTTTCTTTG 763027 29 100.0 32 ............................. CGGCGCGGGGGCCAATGCAAACGCTACCCAAT 763088 29 100.0 32 ............................. TGTGTGATAGCCGTCCAGATTTCTATCGTGGC 763149 29 100.0 32 ............................. CCGTGTTATTTTGGATAAGAACAGGCACGGCC 763210 29 100.0 32 ............................. CCTGTGTCGCCTTTTTCGGTGACGCCGAAGTT 763271 29 100.0 32 ............................. AACAGCATCCCAACCCTTGCCGTACTTGCTTT 763332 29 100.0 32 ............................. GTTACACAGAACGGATATGTCGATATCAACAC 763393 29 100.0 32 ............................. CTGGACGCGGTTTATGAGTCTATGAATGCGGT 763454 29 100.0 32 ............................. GCCTCGGCGACGTAGACGTATCTATAGACCTG 763515 29 100.0 32 ............................. GCGATTGTGTATTTTGTCGAAAAGGTCTGGGA 763576 29 100.0 32 ............................. CTCCGGTTACGGTTGAGGATTTCATCCTTGAT 763637 29 100.0 32 ............................. GAAGGAATCGAGCACTTTTCTACAAAGCTCAT 763698 29 100.0 32 ............................. ACTCGAATAGTGTTGTTTCAGTACCGGCATGA 763759 29 100.0 32 ............................. TCAGAAAAACCGCGCCCACATAATACAATCGT 763820 29 100.0 32 ............................. CATGCGATAGCTCTGGTGCCGTGTATTCTGGT 763881 29 100.0 32 ............................. CTTATTCCCCTCACACGCTGACATGATGGCTA 763942 29 100.0 32 ............................. GACCCGAGCGGTGTTTTCGGGCTGGACGCCAG 764003 29 100.0 32 ............................. GCCTTAACAAGGTGCCCAACCGCGTTCTGCAG 764064 29 100.0 32 ............................. TCTGCCGATGCTGGCTGCTACTGGCGCGAACT 764125 29 100.0 32 ............................. GACTCCAGATCACTCATCGTATGCGTAATCAT 764186 29 96.6 32 .........A................... ACAATGCGTATGATTCGGGCTTTCGCGGGTAA 764247 29 100.0 32 ............................. TACCCTTAAATCGCTTGAAACAAGCGGTGTGC 764308 29 100.0 32 ............................. TACCTGCCCCCTCTTATATCGAAGAAAAAGGC 764369 29 100.0 32 ............................. ACGTGAACCTGCAACTGCAAATGAGCGCCCGC 764430 29 100.0 32 ............................. ATGGACTTGACTTTGTTGACGATCAGGACTGT 764491 29 100.0 32 ............................. CGCGACGGGGGCATGATTAGTCTAGGCACGCC 764552 29 100.0 32 ............................. GGCGAGGTTTACGGCCAGGGTGCTTTTGGACG 764613 29 100.0 32 ............................. ACCTGCTAGGCACCGTACAGACCGCCGAGGTT 764674 29 100.0 32 ............................. AGGCTGGTAACATCCTGCCCTGCTTCGTCGGT 764735 29 86.2 31 .........A..C...........G.T.. GCAGAACAGTCGCAACCGCACGGAAATAATC G [764758] 764796 29 72.4 0 ..T..T...A..C.T....A.....A..G | A [764807] ========== ====== ====== ====== ============================= ================================ ================== 48 29 99.1 32 GTGTTCCCCGCATACGTGGGGATGAGCCC # Left flank : GGAATGAACGCGGTGGGGATCAAAAAAGCGGACATAATTACAGTGATGATGAGGGGGAACTATGATTGTGGTTGTCCTTTCAGCTTGCCCTGTTGGCTTACGCGGGGATTTAACACGCTGGCTTCTTGAAATTAGTGCCGGGGTATTCGTAGGAAAGGTGAGCGCCCGCGTGCGTGAGCACCTGTGGAACCGTATTACTACAACGTGTAGTGATGGTAGCGCGCTTATGGTGTATTCGGCGGACAATGAGCAGCGTCTTGAGTTTAAAGTGCACCGTCATCCGTGGGAGCCTGTCGACTTTGAAGGGATAAAACTTATGATGCGCCCGTCTGCACCGAAAGAGGAACTAGGGCCACGAAAAGGGTGGAGCAAAGCTAGCAGGTATAGGCGCGCTTCCCGACGGCGATAAGCCCAAAAATCGTGTAGGGTTAATACTGGCTTTGGGCTCCAAACTAATTCTAAAACTTGGTGTGTGGGGATAAAACCCCATGTCAGCAAGT # Right flank : GACGTTTACTAGGGTATGTACCCTGCGGTTTTTGCGTTCCCCACATATAGACAGTCCGAGCGACTGCTGGCTGGGTATGATGTAGCTCCTCGTATTTTTCTATTCCTTACCTCACTGTTTTTAATAAAATATTTTGCGGATTCCGCCCTCAGCATGTGCTGTGCACCTGCGGGGAGGGGGGTCTATACTCTACAGTTAATAGAGAAGGCTCCTGATCGTTCCCTGCACCCGTAGGGTCTGCTAGAAAACGGCTTGCCTGCCCGAAATTTTTTTGGGTGGGTTGGCCGCTTTCTTTTATTTAATTTTCTTTTGCTGTGTTTTCTAACCGTCAGCTTCGCGTCTACCGTTTTTTCATGGGCTGCGGGGATAAAAGTAATTTTTTGTGTATTTTCGGTATTCAGTTTGTAAAACCCTGGGAGTTCGCTAAAAATTATGGGTAGAGCATTATTGAGGATGCTTTTGGATGCGTGCCCTGTTTCTTCCGGTTAAGAGTGGTCTTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCATACGTGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCATACGCGGGGATGATCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.80,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //