Array 1 965929-967176 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020752.1 Salmonella enterica subsp. enterica serovar Montevideo str. CDC 2009K-0792 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 965929 29 100.0 32 ............................. TTGAAGACCGCGCTGATGCAATCCGCCAGGCG 965990 29 100.0 32 ............................. TCGGCATTGATCTTGTTCAGTTCAGCCGGTGA 966051 29 100.0 32 ............................. TGACCACAGGTTTTTCGTCTGCTGATGTCGGC 966112 29 100.0 32 ............................. GACAAGCTGGAACGTGATCGGCTTACTGATGA 966173 29 100.0 32 ............................. CGCCGTAAATTGTGGTACGTCGTGACTACAGA 966234 29 100.0 32 ............................. GCGACCTGCTCGACAGCATTCAGTTTGTTGTT 966295 29 100.0 32 ............................. GCAGCCGTGCGCAAGCGTGGCCTGACGATGAG 966356 29 100.0 32 ............................. TGCTGTTTGCAGACCACACAGGCGACAAATTC 966417 29 100.0 32 ............................. AGGGTGAACGAAGTCACTCTTAAATTTCTGAA 966478 29 100.0 32 ............................. TATGAATTTAATGTTTATCCTGGGCGCTATGA 966539 29 100.0 32 ............................. GTTAGGGAAGGTACTCCTGGCTAATTCTTTTG 966600 29 96.6 32 ............................A TTAGTATCAGTATAAATAACCACGTATTCACC 966661 29 100.0 32 ............................. TATGAGCCGATCTGGAACGTGAGCGCTGAAAC 966722 29 96.6 32 ....A........................ AGTTCGGCAGGTTTTAGTTCCGTCGCGTTTGC 966783 29 100.0 32 ............................. AAAATATAAAGTATGTTTTGTTTAATTCTAAA 966844 29 100.0 32 ............................. GCAAAACTCCCCAGATACCGCGCATCGGCACT 966905 29 100.0 32 ............................. ATAAATTATCGGGAAATCATAATCAGCGCCGC 966966 29 100.0 32 ............................. TCGAGTTCTGGCACGTCAGACTGACGTATCGC 967027 29 100.0 32 ............................. AAAACCCTCAAATATGCGTAACGGGAGGCTGG 967088 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 967149 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCACGAAGTGCGCTGTACGCCTAACACCTGGGTAACGGTTTCACCAAAAGTGAATATGCGCGGGGGATATGACGTGCTTTCCCAGGCGCTGGAGCGCGCCAATGAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATGCATTACTAATTTTACGGACGGCCTGCCGATGCCGTCTGTGAGTCATCCATTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGAGCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 983939-986103 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020752.1 Salmonella enterica subsp. enterica serovar Montevideo str. CDC 2009K-0792 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 983939 29 100.0 32 ............................. CCCTGGTTAATGATGGTTGTCAGCTTAGCCAG 984000 29 100.0 32 ............................. GTGGCAGCTGAGAACCCGGAGGTTATCCGGTG 984061 29 100.0 32 ............................. GTGCCGTGTTTGAAATTCCCAACGATACGTTG 984122 29 100.0 32 ............................. GCGCGGCTCGCATGTCAAAAATTGTCGATACT 984183 29 100.0 32 ............................. TGGCAAACGAAAGGCCATGTTGGCATAAGTAG 984244 29 100.0 32 ............................. ACGTATTACGTTTATGTCCGCACCAAAAATGC 984305 29 100.0 32 ............................. AGACATCAATTACTCAGGACGGGATGATGTTT 984366 29 100.0 32 ............................. TATGCTGAATTACAGGAAGGCAGGAAGTACGC 984427 29 96.6 32 ............................T TACCTGGTTGAATTCGGTCTGACTCCGGCCGC 984488 29 100.0 32 ............................. GCGCCCGCGGCGATTTAGCATAATCTGCAGTT 984549 29 100.0 32 ............................. GAGGGGGTTTCTTCATCGTCTGATGAAAACGG 984610 29 100.0 32 ............................. TCGGATGCATTGGGAGCGGGATTGCCGGAGCC 984671 29 100.0 32 ............................. GCTTCCCAACCTACCTGGAGCCAGGCGCGTTC 984732 29 100.0 32 ............................. CGGGCGCGGTCGAGAAACCATGCCTGCTGATA 984793 29 100.0 32 ............................. CCATATACAGTGGCGAAATTCCTTTTCCTCTT 984854 29 100.0 32 ............................. CGCAGGCAACGCTTCCCATTCCTCCTGCGACA 984915 29 100.0 32 ............................. CAACAGCCGGGAAAATGAAGGCTGAAGGGCAA 984976 29 100.0 32 ............................. AATCTAATTATGACGGCAAGGCGACTACTAAA 985037 29 100.0 32 ............................. AATAATCACATCACCATCACGCGCGACAACAT 985098 29 100.0 32 ............................. CGGTCTCCAGATAATAGCCGATTTATTTAAAA 985159 29 100.0 32 ............................. GCCCGCATTAAGCCGCTGACGCACTGGATCAA 985220 29 100.0 32 ............................. CGCTCGCAATCGAGGTTTGCGCCGAGTTGCGT 985281 29 100.0 32 ............................. GGCAATCATTAACAGCGCCGTTAATTCAGCGA 985342 29 100.0 32 ............................. GGAGACGAGAAAATCTTTAATAGTCTCAGCGT 985403 29 100.0 32 ............................. CCCGCAATCTGCGGGCGTTCTCGTCAATTTAC 985464 29 100.0 32 ............................. GATTGGCCCTTAGATAACGGGAGATCAAGCGC 985525 29 100.0 32 ............................. CATAACCTTCGCTACCACACTTGCCGGTACTT 985586 29 100.0 32 ............................. CCTTGAGGTTAGGGGAGTCAGGAAATTGCATT 985647 29 100.0 32 ............................. ACAAAATCGGCGGCCCAATCGCCGGCGCTGAC 985708 29 100.0 32 ............................. GCCTGCCGTCTTTTTATTGAGGTCTGTAAACC 985769 29 96.6 32 ............................T TAATCATTTTGTTTAAATCCCGGATCACCTCC 985830 29 100.0 32 ............................. GAGTTATTGTCACTCGTCAGTGATAATTTTCT 985891 29 100.0 32 ............................. CCCGTTGAAGATCTGGACGCATGGGGCAAAGC 985952 29 100.0 32 ............................. GTGAGCTCGGTTTTAATTTCGTCGCTAAGGTG 986013 29 100.0 32 ............................. CAAAAGGCCGACAGTGTGTACACCTCTAAAAA 986074 29 96.6 0 ............T................ | A [986101] ========== ====== ====== ====== ============================= ================================ ================== 36 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGAAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAATTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGTTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGTGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //