Array 1 163655-161063 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWNH01000045.1 Salmonella enterica subsp. enterica serovar Weltevreden strain CNGD2015020 scaffold5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 163654 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 163593 29 100.0 32 ............................. CCCCCTCCCCTACTCCGCGCCGGAAAAAAAAC 163532 29 100.0 32 ............................. TTCTTTTCGTGCGTCGCCCAGCGTTTGTGGCA 163471 29 100.0 32 ............................. GCGGCAAAAGCTGTCAGCGATTTTTTCAGTGA 163410 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 163349 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 163288 29 96.6 32 A............................ CCCGCATTTCTCGGTGATCGACTTTGTAACCT 163227 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 163166 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 163105 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 163044 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 162983 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 162922 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 162861 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 162800 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 162739 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 162678 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 162617 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 162556 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 162495 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 162434 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 162373 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 162312 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 162251 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 162190 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 162129 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 162068 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 162007 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 161946 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 161885 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 161824 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 161763 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 161702 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 161641 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 161580 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 161519 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 161458 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATTCGCACTGCCT 161397 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 161336 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 161275 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 161214 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 161153 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 161092 29 93.1 0 A...........T................ | A [161065] ========== ====== ====== ====== ============================= ================================ ================== 43 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 182205-180162 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWNH01000045.1 Salmonella enterica subsp. enterica serovar Weltevreden strain CNGD2015020 scaffold5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 182204 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 182143 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 182082 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 182021 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 181960 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 181899 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 181838 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 181777 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 181716 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 181655 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 181594 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 181533 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 181472 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 181411 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 181350 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 181289 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 181228 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 181167 29 100.0 32 ............................. CTGAGTAGCGATCGCCCCAATCCAAATTTGAT 181106 29 100.0 32 ............................. CCGGAGAAATTCAGGGTCATGGATGAAGCCGG 181045 29 100.0 32 ............................. ATCTTAACCAGCAGGCTGGGTTTGGCGGGATC 180984 29 100.0 33 ............................. GCTTTAGCCACGTTCCCACGCGCAAACACCAGC 180922 29 100.0 32 ............................. GTGATCGCGAGTGCTGAGGCTGAGGTTGAAAT 180861 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 180800 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 180739 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 180678 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 180616 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 180555 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 180494 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 180433 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 180372 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 180311 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 180250 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 180189 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 34 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //