Array 1 352267-353626 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPCV01000011.1 Listeria monocytogenes strain FSL R8-9399 contig000011, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 352267 36 100.0 30 .................................... ACGTATTTTGAAATCTGGATGGCATTTTCA 352333 36 100.0 30 .................................... TCCGCTTAGCCGATGAAATTCCAAGCAATA 352399 36 100.0 30 .................................... TTTATTCACCGGACAAGAAACGACCTCGTC 352465 36 100.0 30 .................................... GAACTTCTTCACCATCCTTCATTTCTGTTT 352531 36 100.0 30 .................................... TCAGACTTCTATATCCACAATAAAAGCCCT 352597 36 100.0 30 .................................... GCGAGTCAATTCATCAAACCCAATCAGAAA 352663 36 100.0 30 .................................... GTGTACACGATAGTCCAAGTCGGTATTTCC 352729 36 100.0 31 .................................... CTCACGTTGTCAAGGTCAAATTTTAGATATG 352796 36 100.0 30 .................................... GAGGTTCGTGGGGGTAATCCCGGCTTGCGA 352862 36 100.0 30 .................................... AGAGGCAACGAGACTACAGACGCACTTAGA 352928 36 100.0 30 .................................... TTTGGTCGAATTCTTCCGCATCTTTAAACT 352994 36 100.0 30 .................................... TTAATGAAGAACTAGAAACAATTGAAAACA 353060 36 100.0 30 .................................... GCACGTATGATCGTCTTCTTTGATGACCTC 353126 36 100.0 30 .................................... TACTCGTATAAAAATCAAGAGAGACGTATT 353192 36 100.0 30 .................................... CTTCCGCGTTACATGTTTGACATCAAGTAA 353258 36 100.0 30 .................................... GTCTAAACTTGGAATATAACTTAGGTCTTG 353324 36 100.0 30 .................................... ACTGATGAAAGTATTTCTCCAATGACAAGT 353390 36 100.0 30 .................................... TTAAATACGATGGAATTAATCTATCGATGC 353456 36 100.0 30 .................................... TCAAAGAGTTTATACCTGTTTTGATTGAGT 353522 36 100.0 30 .................................... TAATATTCTTCCCCCCCATCGCTAACAGGG 353588 36 86.1 0 .............A.....C.....T.A.......G | A,A,C [353613,353619,353622] ========== ====== ====== ====== ==================================== =============================== ================== 21 36 99.3 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCACTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCACTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATCTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAGTTTAAAAATCTTGTATGATTATATTCTAAATACGAGTAAAGATAATGACACGCTTGAACTATATACTGCTTGGAAAAGCGAGGAAGATTTCCTGCTATTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGATAGAGAACTATTAGTAATTAAAAAAGAAAACCGATATAACTTTTAGCACCATTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //