Array 1 250305-251923 **** Predicted by CRISPRDetect 2.4 *** >NZ_FCJR01000002.1 Serratia marcescens strain 2880STDY5682934, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================================== ================== 250305 28 100.0 32 ............................ TGGTGCAAATACAGCGAGTGTTGCGGTAGAGG 250365 28 100.0 32 ............................ GCCGGCATAAATCCACTGGCGCAGGCCGTCGC 250425 28 100.0 33 ............................ GCCAGGGCCTCGACCGCATCATGATCGGCTGGA 250486 28 100.0 32 ............................ GTCCGCATTGATTTTCCCGACGGCGCGGTCAT 250546 28 100.0 32 ............................ ATCACTAGCGCATCCAGATTGTGATAGTCGCC 250606 28 100.0 32 ............................ GAAAGCAAATACTGCTGAGTCGGGCCAGCCAG 250666 28 100.0 32 ............................ ACTTAGTGCTGGGTGGGTATGGTGCAAATGCT 250726 28 100.0 32 ............................ TGGTCACCGCCGGACAAGACGGCACGCCCCGT 250786 28 100.0 32 ............................ TATGACACCGACCGCAGCCGCGGCGTCAGCCA 250846 28 100.0 32 ............................ AACAAAACCTACCCGGCGAGAAAGCTGTACCC 250906 28 100.0 32 ............................ AGGCGCACGACAAGCGGGTTTAAAACGATGCG 250966 28 100.0 32 ............................ AGTGAAACCGATTGAAAAGTTTCACGCGAAAC 251026 28 100.0 32 ............................ GTTAGAATATTTGGTGTGAATAGATTGCATGG 251086 28 100.0 32 ............................ ACAAACTCAACCTTGCGCTGACGGGTGTTGCG 251146 28 100.0 32 ............................ AGCCACAACCCAAAATCGTTATCAAGCGCCAT 251206 28 100.0 33 ............................ CGCTGTAGTTCTGCCCATCAAATTTGACACCCT 251267 28 100.0 32 ............................ TTTTTCGCGGGATCATACAAATGCCAGTAAAT 251327 28 100.0 32 ............................ GGGAACGAAAGCACGCTGCAGGCCGCCGCCGA 251387 28 100.0 32 ............................ AAACTCATCGACAACGTTGGCAATTTCACGAA 251447 28 100.0 32 ............................ GGCACAAGAAGAGGTTTTTTGCCTTCTTTCCG 251507 28 100.0 33 ............................ ATGAGCGCTACAACAACCAGATAAGGATCTAAC 251568 28 100.0 32 ............................ AGCCTGATAATTTGTCCAAATCGCCACTAATC 251628 28 96.4 32 ...............A............ CCGGACAGGCCGGCGCAGATCCACAGTTCGTC 251688 28 100.0 32 ............................ GTTCGCGCAAACGGGAAATCGTGATGCAGCCT 251748 28 92.9 56 .........T...T.............. TAGCTGGCGGGTAGTGATTTCGCCGGTATCGGTGCACATGCGTTGGTAGTAGATGA 251832 28 92.9 33 ..T..A...................... CCGACTGCGGCTACGCCTTGTCGTGACCACTCC 251893 28 96.4 0 ....................A....... | A,A,G [251913,251916,251919] ========== ====== ====== ====== ============================ ======================================================== ================== 27 28 99.2 33 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATCCGGCCTACTACGGCCGCTTCGGTTTTAAACCGGCCGCCGCCTATGGCCTGAACTGCCGCTGGCCGGACACGGAAAGCGCGTTCCAGGTGTATCCGCTGGCGGAAGACGCCCTGAACGGCGTCAGCGGCGAAGTGGCTTTTTCGGCGCCGTTTAATCGCTTTTAACGACCGGCAATAGATACTCCAACGTCAGCGGCGGGTGATTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGAGTTGGCAATTCAGGTCATCTGTGGGGGCTATGCGTCTGAGTGGGACGGATGGTGATACCAAACAGGGAACCTATAATTCCTCCCTAAAGTGCAGAAATGTCACCTTACCCCGTTCCTTTTTGCCGAACCCTTTTTTGAGTGTCACTTTTAATTTATTGATTTAAAGTCATATTTTTAAACTCTTTAAAAAAGGCTTTTTGAACGGAGATTTCGATTTTCCTCCATCAATCAGCTGATTAGCGCTAATATGCAACG # Right flank : AAAGTAATATGTATTTGGTAGATTCCGGCAGTGATCAATAAGTGGATGACTTTATTTTTCTGATTGATGAATATTGACTCGCTTGCAACGGATTTCCCAGAAAAAACGTGGTAGAACGTTGGTGTCGCCTGCATTGATATGCATTGCTTGTTATTTATTTTAATTGTAATTATTTCATTATGGATAAGAAATATAACAATGAAAAATACCCTCTCCCCCTCTGAGTTAAAAACAATACTGCACTCGAAACGAGCCAATTTGTATTACCTGCAATATTGTCGCGTTCTAGTGAATGGCGGCCGTGTCGAATATGTCACGGATGAAGGAAAACAGTCTCTGTACTGGAATATCCCCATTGCCAACACCACCGCCATCATGTTGGGAACCGGAACCTCGGTCACGCAGGCTGCAATGCGTGAGTTTGCTCGCGCCGGCGTTTTAGTCGGATTCTGTGGTGGCGGTGGGACACCCCTATTTGCTGCTAACGAAGTGGAAGTCGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 260405-262292 **** Predicted by CRISPRDetect 2.4 *** >NZ_FCJR01000002.1 Serratia marcescens strain 2880STDY5682934, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 260405 28 100.0 32 ............................ TGCTGCATCACGAAACGCCGCTGGTGTATTGG 260465 28 100.0 32 ............................ CGCGACGGTCGGCATACCGAACTTGTCCAGGA 260525 28 100.0 32 ............................ TGTTCGGCGGCTCGGCCGGTTTTGCGGTTGGC 260585 28 100.0 32 ............................ TGGCGGGTGAATACGCGCCGCGACTGCGGGGA 260645 28 100.0 32 ............................ AATCAGGGGGCAATAATGGCGACGATTGACCT 260705 28 100.0 32 ............................ ATTACGGCCTGCGTGATAAAGTCAGCCGGAAC 260765 28 100.0 32 ............................ TTTTCATAGTGGTTTCACAGTCCCTTGAATAG 260825 28 100.0 32 ............................ GACCGGAAGTGGGTAAGGTTCGCCTGCGTCAA 260885 28 100.0 32 ............................ AATAATTCAGCAATATCGAGCAGGGGGATTTT 260945 28 100.0 32 ............................ GAAATGCGTGAAAACCGTGGTGAGATTTTCGG 261005 28 100.0 32 ............................ TTACTGGATTATTAATCACCCCGTGGGCGTCC 261065 28 100.0 32 ............................ AATCAATTTTTATCTGAATCAGGACAAACAAT 261125 28 100.0 32 ............................ GGATGAATCGCGGCGTGATATTTCCAGATGAC 261185 28 100.0 32 ............................ TATTCCGAATGCGTTAAAGAGTTGCCCAAATA 261245 28 100.0 32 ............................ TGCAGGACATTGAGAAGGTTCGCGCGGCGAGC 261305 28 100.0 32 ............................ TTCTCATTTTTACCCTGTGCCTGCTGACTGCC 261365 28 96.4 32 ...........C................ GGTAAATCATCCCACTCGCACGTTCGCATATC 261425 28 96.4 32 ...........C................ TCGCCAGTCTTACCGCTGTGCTTGTACCACAG 261485 28 96.4 32 ...........C................ TTATTGAAAAGCCCGCGTTTCGCCGGCGGCTC 261545 28 96.4 32 ...........C................ GTCACCGGCAGGAACGGACGCGGGCGGATCAC 261605 28 96.4 32 ...........C................ AGGACGACCTGAACACGTTTGTGCAGCAAGTC 261665 28 96.4 32 ...........C................ GAGGATTTGGCCGTGTTTGAGCAGACGGTCAA 261725 28 96.4 32 ...........C................ TGTACCGCCGGTGCCGCCAACAGAGGCGACGC 261785 28 96.4 32 ...........C................ TGCGGGCGCAAAACGGCAATCAGATGAACCTG 261845 28 96.4 32 ...........C................ GTTGACCGCCGGTACTTTCACTGCTGGCCTGC 261905 28 96.4 32 ...........C................ ACGGGACTCATGGCTTCAACCAAGGGGGCCAG 261965 28 96.4 32 ...........C................ AGTGGCAAGCAATGCGCGCTAAACTTTCTGCT 262025 28 96.4 32 ...........C................ TAAATGGTGCCAATTCGCAAGTTTGTTACCTT 262085 28 96.4 32 ...........C................ TTGAATAATACGTTTAAGGATTAAAAGATGAA 262145 28 96.4 33 .............C.............. AATTTACGCAGCGGGTTGCCGACTTTGATTTTC 262206 28 96.4 32 ..G......................... CCGCGCTTCGATAGCGGCAAGTGTGGCACCAG 262266 27 82.1 0 T............C......-..T...T | ========== ====== ====== ====== ============================ ================================= ================== 32 28 97.8 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GCGCTGACGGCATTGGAGGGATTCGGCTGGATGAAAGGGTTACGGGACTATACCGACCTATCGCCCATCCAGGCCGTACCTGCTGAGACGGCGTTTCGTACGGTCAGCAGAGTTCAGGTAAAGAGCAGCGTTGAGCGTATACGCCGCAGGGCCGTCAGTAAAGGTTGGCTGACTGAAGAACAGGCACGGGAAAGAATACCGATGGCAAACGAGCAGCGAACCTCATTGCCTTTTATTGCCTTGAAGAGTCTCTCCACCGGGCAACACTTCTGCTTGTTCCTGAAACAGGGCCAATTACAGGAAAGGCCAACGCCGGGCGTTTTTAGTTTTTATGGGTTGAGTGCCGCTGCTACGGTACCCTGGTTTTAACCCTTTTTTTTCGTTCAGAGGTAACACATTGATTTTGTTGCCTCTGAACGGTATCTGAAAAATTAGGGTTAAACTGAGGGATTTGCCTATTGTTCTTTAATAATCAGTTTGTTAGTGATTTTTTTTGTTCA # Right flank : TAGGGGGGATAAAAATTTACCGACAGGTGTTAACCAGGAAGCAAATACGCCAACGACAGCGGCGGGTGATTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGACGCGGTATTCCAGCTTCAGCGCCGTTGAGCGATCCCCCACCTGGCAGTGAAATGCCAGCGTCAGCTCCCCTTTTCCGCGCAGCGCCTTGGCGCCTTTGCCGGCTTGATGCTGCGCCAGGCGGCGCGCCACGTCGGTGGTGATGCCGGTATACAGCATGCCGCTCGGTAAACGCAGCATGTAGAGGTGCCAGGGAGTGGGGGAGGTGTCGGTCATCGTACGCCGCTTTGGTGGCCAGGGTCGGCGTATGATGGCATGTTCGCCATCACAATCCCATCCCCGGCCGCCGGTGCCCTACCGCTTTACCCCTTTTTTCCCGCCAGCTCGAAGCGCGGCGAGACGATGCCGTACAGCGTCCAGCCGAGGAAGGTGGCGATGGCGCCCCACATCATC # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.76, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //