Array 1 42-341 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJJY010000028.1 Ligilactobacillus agilis strain An796 An796_NODE_28_length_21675_cov_121.69, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 42 36 100.0 30 .................................... CACTCATACCTTCGTCAATTTCCATATTAG 108 36 100.0 30 .................................... GAAAGAGGTAAAAATTTATGGAACAAAGAA 174 36 100.0 30 .................................... AATAGGCATTATGACTTGCTAGACTTTGAC 240 36 100.0 30 .................................... TTGAGTTTAGATAACCTTCAAACTTTGGGC 306 36 94.4 0 ........................A..........G | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 98.9 30 GTCTCAGAAGTATGTTAAATCAATGATGTTTAGTAC # Left flank : ATGTTTAGTACATTCCTTCGGCAAGTTCGCCTAATTCCTCAG # Right flank : GTATAAAGTATCTGAATAGCTTGCCAACTTAGCCCTGTGGTAAAATGAGGGCAAGACTAAGTGAAGGTTGTGATCTTGTGAAACTTATTTCCTGGAATATTGATTCGTTGAATGCGGCGTTGACCGGTCAATCAGAGCGGGCAGAGCAAAGCCGGGCGGTGCTTGCTACCATTCAAGCCCAAGCACCGGATATTGTGGCTATTCAAGAAACCAAGTTGCCGGCTGGTGGTCCCAACAAGAAGCACGTTGAAGCGTTAGCTAAGTGGTTTGCGGACTATGATTTTGTTTGGCGCAGTTCGGTGGAACCAGCTCGGAAAGGCTATGCGGGGACGCTCTTTTTATACCGTAAGAATTTAACCCCTAAGGTAACCTATCCTGAAATCGGGGCGCCTAGTCCGATGGATCAAGAAGGCCGGATTATTACCCTGGAGTTTCCTAAATTTTATGTTAGCCAGGTTTATACACCGAATGCGGGGGATGGACTTAAGCGCTTGGCCGAA # Questionable array : NO Score: 3.01 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGAAGTATGTTAAATCAATGATGTTTAGTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 8464-7885 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJJY010000022.1 Ligilactobacillus agilis strain An796 An796_NODE_22_length_39451_cov_84.6003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 8463 29 100.0 32 ............................. TAGTAGTTCCTGCGAGTCATTAACGATAATCA 8402 29 100.0 32 ............................. CTGTTATCCGGCCTAAAACTCGTTGGGTCTTT 8341 29 100.0 32 ............................. CACAATCAAAATTTCTAAATCAAGAAATTGCG 8280 29 100.0 33 ............................. TATCTGTATCGTTTCTGATAAAGAATGCTCTAG 8218 29 100.0 32 ............................. GTTAGATGTCCCTAATTTTGTGTAAGTTGATA 8157 29 100.0 32 ............................. GGGACGCCCAACAGTGAGTATGACTTCGCAAC 8096 29 100.0 32 ............................. AATTGCAACCCTAGCTATCTTCAAATAGATAG 8035 29 100.0 32 ............................. GATAGAGAAATTTTGCGCGGAGTTATTGAGGG 7974 29 100.0 32 ............................. ACACCAAACAAGATACAATAGCACATTTACAA 7913 29 82.8 0 .....................AC...ATG | ========== ====== ====== ====== ============================= ================================= ================== 10 29 98.3 32 CTTCTCCCCACACTGGTGGGGGTAATCCT # Left flank : TGTACGCAGAATAGCATTATTTCGATCAGTGCCGTACGTAAAGTTAGTGAAGAGTATAAAACTTTTAATCGGTACATAAAAATCAGTACATCTATACCTGAAAATATTGTAAAATTAACAGGTATTACAGATACATTATTAGTTAACGAAGGTGTCGAACTGATAGATGGACTTAAGGATTTTATAAGTTTTTTAGGAAAATCCACCGTTGTGGGCTACAATGTTAGATTTGATTTTGATTTTTTACATGCTGCATGCAAACAGGTAGGTTTAGAACTACCTGCTAATCGAGTGGTTGACTTGGCAGTGCTCGTAAAAAAGGATAATGAATTTTTAGATAACTATCGCTTTGCAACGGTTTTAAAAGAATATGAGATTGATAATACTCAACCGCATAATTCTCTGTCTGATTCTATGGCGACTTACGAACTTGCAATCAAACTGATTGAAAATGATTGTTTACGAATTTAAAAATACCGATTTATCAACGTTTTTTTAGT # Right flank : AATTAAGCCAATAATTCGTTGGTAAACATGCCATAATGAAATGTATGTAATTATTTTCCTAATTCCCTATACTACTAATATGGACATAGTATATGTTGAGTCTAAGCTGTTACCAATACATAAGTTCTATTTCTAGGGCCAAAAACAGAACTAGCAAATGGAGACTAACCACTTGCATCATGTGTGATGGTTATAGCGAAAAATACCCTCAAATAACCTATATTTGGCTTATTGTTGGATTCCTAAACATTTGTTAAAATGTAGGCAACAAGGGAAGTTGATGGAAATAATATTAGTAGCTAAATTGAGTTGAAGGATAATGGTTAAAGATAGTTAACCACTTTTAGTAACGAGCTGTTAGCGCAAGTTTTAGCATTTTTTAAAAGCAGTTAGGAGGAAAAATAGATGGATAGTGTAAAATATCAACCAAGCCGGCATATTATGGATTTTCATTTGGCGGGCTTTGCTTATTGTGATGGGTTGGATGTGATTGAGGAGTT # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCTCCCCACACTGGTGGGGGTAATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.10,-11.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 50501-52780 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJJY010000017.1 Ligilactobacillus agilis strain An796 An796_NODE_17_length_52780_cov_123.175, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 50501 36 100.0 30 .................................... ACTTCGCTATACTGACTAGCTGTTTCACTT 50567 36 100.0 30 .................................... TTAAAGCGCTCAGACGTTTTTCAACCATTT 50633 36 100.0 30 .................................... GTATCAATATCACGGCCAGCTCTAAGTTTA 50699 36 100.0 30 .................................... TTTCCGATAACGAATTTAATCTAACTAAAG 50765 36 100.0 30 .................................... TATAATCATACCTGTGTGACCAAACTTGTT 50831 36 100.0 30 .................................... TCTAATAACTGACTATTACTACGATTACTT 50897 36 100.0 30 .................................... GCTAACTCCACAAGAGGTCAAAGACAGATT 50963 36 100.0 30 .................................... AGATGGGCAAGTAAGTATCTTGATGTTACT 51029 36 100.0 30 .................................... TAACTAAACTAATTGGCTTGGTGACTCTTA 51095 36 100.0 30 .................................... ACTGAACCCCTAAAACCACCTTTGAAGAAC 51161 36 100.0 30 .................................... ATTCAAAGATTAAAGCCCATTGGCAACAAA 51227 36 100.0 30 .................................... TTCATGAACAATCATCGCATCATCTTTCCA 51293 36 100.0 30 .................................... CGGAGCAAGAGCCAAGACGACCTAAGCACT 51359 36 100.0 30 .................................... ATTTTGTGCAAATACTGAACACCTTGGTAT 51425 36 100.0 30 .................................... ATTAACGCGCGAAGGAAGGCACAGTAGCGA 51491 36 100.0 30 .................................... TCAGTCTGAGAAACTTTAGCTCGCATATCA 51557 36 100.0 30 .................................... TAGTTTCAAAAGGCTTAGCACCAGTTAGTT 51623 36 100.0 30 .................................... GCTTGTTCGTCTGTAACTTCCGGTGTAATC 51689 36 100.0 30 .................................... TCATTCTCTATTTCCTTGGCAACCCTAGTG 51755 36 100.0 30 .................................... CCAAGTATTGACCAAAGGTTTCCAGATTCA 51821 36 100.0 30 .................................... TCCCTTACTGATTTATCTTACAAGATTATA 51887 36 100.0 30 .................................... AACCTTAATCGCCAAGAAGACGATTACTAT 51953 36 100.0 30 .................................... TCGCTCCATGATACCCAAGCTGTACGTATA 52019 36 100.0 30 .................................... ATTGGGTTTAAATCGTACGCAGGATGCAAG 52085 36 100.0 30 .................................... ATTCCTTCGGCAAGTTCGCCTAATTCCTCA 52151 36 100.0 30 .................................... GATGATTTTTCAGAATTTCACCCAAGGGGG 52217 36 100.0 30 .................................... TCATCGTAAACCATAAAGCCTTCGTCCGGC 52283 36 100.0 30 .................................... TTTGCGTCTGGTGTGGATGCCAAGCAAGTA 52349 36 100.0 30 .................................... CTGATGATGCTAGGAATTGGCAAAGAGGTA 52415 36 100.0 30 .................................... ATTTTAGCCAGGCTTTTTTAATGCTCGTAC 52481 36 100.0 30 .................................... GACCGTGCGCGTTGGTCGGAATATTGGGCA 52547 36 100.0 30 .................................... ATTATATTGGCGATTTGTTTCTTTACTCAA 52613 36 100.0 30 .................................... AAAATATTAGTTCTTGTTAGGGCGCATGAG 52679 36 100.0 30 .................................... ATTCCTTCGGCAAGTTCGCCTAATTCCTCA 52745 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 35 36 100.0 30 GTCTCAGAAGTATGTTAAATCAATGATGTTTAGTAC # Left flank : TTAATCATGACTTAGATAAACGTTACAAGCTAGAGTTAGTTAATAAGATTACCGAGGGCTTGGCTCCGCACGTGAGGACAAGTATTGAAAAGAAGGCGCGCGAATTATTTACACTCTTGCAGGAAAGTTTGTTTATGACGGATATTCCTTTAGAAGTTAGTTTTGATGGGGATGTTAAACGGTTACTTAAATATGCTAACATCCACTTACATCCTTCTATATCTAATGATGCTTATGGTATAATTGAAAGTGATTTAAAACTTCATATTGAGTGTGATGATAAATCGTGTATTGTGTTCAATAACCTAGCTAGTTATATGACGCAAGAACAATTTCGTGAACTTCAGTATGTTAATAACGAAATTGGCACGAAAGTTCTTCTAATTGAATTTTCAGATTTGGATAAGAAGGACTATTATAAAAACTGTAATTATTACTATATTGATGCTGACTTCGTTGGTTGGTATTTCTAAAGATTAGATATTGATTAATAAATGTCG # Right flank : | # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGAAGTATGTTAAATCAATGATGTTTAGTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 25525-25754 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJJY010000004.1 Ligilactobacillus agilis strain An796 An796_NODE_4_length_126940_cov_79.732, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 25525 30 100.0 36 .............................. ACCAGGCACACCCGCACGTGCACGCGGTCCTGGTCG 25591 30 100.0 37 .............................. GTATATCAAGGTTCAGTTAGTTAGTCAATAACTTTCA 25658 30 100.0 37 .............................. CCGGTTCCAATGCGATTGAAACTAGGCGCGCCCTGCG 25725 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 4 30 100.0 37 GAATCTATTTAACTTAATAGGAATGTAAAT # Left flank : TTAGGCATGCCGAAACTAAGGCGTCTAAGTAACTTGATTTTACGTTTGATTCCTTCAATAAGGCTGTTTGAGTATTTAGCAAATTTAGGATTAGCTATATTCAAAACGTGGACTAAATTTTTATCTGTTATTAAGTAGGGTATTTAAGGTTTGAATTAAGTGATTATTATTGATATTCTTAATGCTTTTAGGATAAGCGTCATCATGCTTCTTAGTTTACTGAACTTTTTCTCGTAAGAAATTTTAGCTGCAAAATTGTTTGTACATGGAGTGTTGTGGTGAAGTACATTTTTTACTAGTTACATTTTGTTATAGAGTGCTGGCATCTGTCGACCTAAGATAAGGTGAAATAGTACTGGTATCGACAGACTATAAAAAGGTTGATATTATAGGCCTTGAAAGAATTTTTGAAAAAGTAATATATAATTGAGAGTGAGATTGGATGATAGACAGAATATATGTGAAAACTAGTTGATAGTGCGGCATTTTGGGAGTGCAGT # Right flank : TTTAGCTAATAGCGACTTGAAATCAATATTGGTTATCAAAAAGAGGGCAGCTAGAGATAGTTGTCCCTTTTTATATTCTAAATTTAAAGATTTGCCTGAAGTGCAAGTGCTTCATAACAGCTTGCATGTAAATAAATATAAATAGTATAGGGAGACTTATATCGAAGCGTGCTTAGCCGAGATCGTCGGAGAAATGCTAAAGGGTATAGAAAAAGATATCATCCATAAGCTAGGCAAGACGGTCTCCCCCCTCAAACGTCCCCAGGCTAGCCTTGATGAGTTGCTGCAGTTTGTCAAAGGGCCCGCTTTCTCAACAGGCGGAATTTATTTTTGGTTAGTAGGTTATGTAGTGGTTTGAATTTTTAAGATATGGAAGTAAGAATCGCAATAAAAATGTTATCAGAAGTTTAAATTTAAGTTACTCAATATCTTCAGTTGGTTAATAGAGGTTGAATTCTATTCAAGGCGGAATTTGAAATCGCAAATTTACAGTCTTTTTT # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAATCTATTTAACTTAATAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 2 34702-33869 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJJY010000004.1 Ligilactobacillus agilis strain An796 An796_NODE_4_length_126940_cov_79.732, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 34701 30 100.0 38 .............................. GCAACCTGTGGGATAGCTGATTCTGATACGTAAACTAA 34633 30 100.0 38 .............................. GAACAAGCGCAACTTCGAACTAAAATCGCGTTACAAAA 34565 30 100.0 36 .............................. TGTTTCTTTGCGTATGCCTTGCCCTCAGTCGTCCGT 34499 30 100.0 34 .............................. CTTCTTCCTTAGCAATGCGTTCAATCTCTTCTTG 34435 30 100.0 36 .............................. AAGCAATTGATGATTACCTGGACACGGTCGAAGACC 34369 30 100.0 37 .............................. TGACTTTTCTTTCTTCTCAGGCTTGCCAGCTTCAACT 34302 30 100.0 35 .............................. TGACCCTTGCATGTTTGCTGTTATCAACTACGAAC 34237 30 100.0 37 .............................. ATGCTAAACCAGGCTTGTGCCGCTCAAGCCAAAGACG 34170 30 100.0 37 .............................. TCCTATCAGCCATTTGCCCAATATCTTCGATTTCTTT 34103 30 100.0 39 .............................. CGGTGCAGAAGTCAGGTTGTTCAACCGGCTCTGGGGTGT 34034 30 100.0 38 .............................. ATTACCCTTACAATCGCAGCGATAGCCGCCCTAGGTGT 33966 30 100.0 38 .............................. GGGGTTACAGGGGGGAGCGTTAGCGTCCCCCCTCTTTC 33898 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 13 30 100.0 37 ATTTACATTCCTCTTAAGTTAAATAGAATC # Left flank : AACATATCAAATTCCAAGACTCCTTTTAAGTTAAATTGAATAAAAAAAGAATGACTTGATACAATCAATTAAGGGTATGCTTTACTTAGGCCTACTAATTACTTTTTCTATATCATCTATAGATACTGGTTTCTCCCAAAATGCTCTTTCATCTTCTTCAGTTTCCAGTCCATAGTCTGCTAAAAAATGAGTTTCGTCTAATTGATCTAACAATGTTATCCTTTTTCCATTTTTCAACAAAACGTTATCGTATTCTTGCGGCTTTAATATTTTCATTACGTTTCACCTCTTTCATATACGAACTGGTATATCTCATTACATTTAAGTCACCTTTAGGAATGATTCAATCCACTACAATATTAATAGGTTCACCGTTATCATAATTCTCAAGATAGCTTCATTATCAACATTATAAGACCCTAAAACCCCAATGACTAAATATAGAATTTAAATTGTTATCTATCGTTTAATAGTTGATTATGATATAACCATAAAAGTTT # Right flank : ACAACCCTTTAAAATCTCTGTACTATCAACTAGTTTCCACATGCATTCTGTCTATCACTACTTTTGTCCCCATATCTACATAATACTTTTTTCTGTGAACTCTTTCAAACCCAGTGATTTCAACTTTTTCATCATCTGTCGATGTTCCCTTCATTTTGCTCTATCTACGGTCGACAGATGTATACTTGAAGTTTTTTTAACATTACAAGTTATACCTATCTCACTTGCATATTTTAAAAAACAAAAAGAGAGTATAAAAAAATACCGTATATAAAATATACGGTACTCACCAGGGAAAGTTATTATAATTGTTAGGATACCTTTTCCTAAAAAAGCATTACATTACCAAACGTTTATAAATCATAAAGCTTGATATATCAACGATTATAACGTCCCAAAACATTATAAAACCCTATCTAAGGAGAGTACAGGATTTGAACCTGCGCGCCGGTGTTACCGGTTCGCCGGATTTCGAGTCCGGTGCATTACCACTCTGCCAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTACATTCCTCTTAAGTTAAATAGAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [65.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA //