Array 1 73950-74114 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPGU01000008.1 Frankia sp. CeD CEDDRAFT_scaffold_7.8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================== ==================================================== ================== 73950 21 100.0 52 ..................... TCCTCACACCAGGTGAGGCCACATGTGAGTCCGCGGGCAGCGCCGGGCGTCC 74023 21 100.0 50 ..................... TACTCCGGCACCGAGACCGCCGCGAACATCACAGGCAGCGCCGGGCGTCC 74094 21 100.0 0 ..................... | ========== ====== ====== ====== ===================== ==================================================== ================== 3 21 100.0 52 GCGCCCGGCGAGGTTCCCAAC # Left flank : TCACCAGCGGGCATTCTCAAACACCTTCTCAGCTTGTCGTTTAACCTTCGGGTGTCACTCTGTGTGATAGTCGCTGGTGGTTTGGGGTGGGCCGGCGTGTCGCCGTGACGTGAAGCGGCCTCCTGTTGATCCTGGTTTCTCACCAAAGACACCGTGATCAGACAGAAGGCCGTGGAGGACAGCTTGGCCCACGATGTCCCCATCGTCGAGCACCTTGGGGTGCTGTGTCGGTTCCGCCAGGAGTTCTATGGCTGTCTGACCCGGCGGGCGGATGCCCTGTTCGAGCTCACCGACGCCGTGCTGTGCGCGGACGGCCCGGTCCGTGACCTGGTCGGCCTGTCGCCGGCAGCGGAGCACCGCCGAGGGCACGGCGCGTTGTACGGCGCGATCAACCACGGCCGGGTCGAGATCAGCCGGCTGCGCCGCGCGCTGGCCGGGCTGCCGCTGCCGCGGGCCGCCGACGGCCGGATCGTGCTGGGTGTGGACGTCAGCCCGTGGCT # Right flank : CCCCGTGGTGGCGGCATCTGCCGCGATCGCGGCGGCGGGCCGTCAGGGGCCCATTTCCCACCGAGGACGATGCGCAGAAGGCGCTGACGGCCTCGTTAGCGGAGCTTCACGGCGGCGACTGGCTGGAAGAGGCCTGACTCGAACCCACGACCGACGGATTATGAGATCATCGGCAGCCTGTTCGCCGGTCTCCATGGACGTCCGCCGGTCCTGATCACAGGTACACCCGGTCGCCCCGCCGCTTCTTGATGATCGACGCCACAATATGGACAATACACCCTTTGAAGCCATAATCGCACCGATCTGGCCACGCAACGGTGCAGGTCGACCGGCGTACACCAGATCGTCGATCATAGCCAAAGAGGATAAGTTATTCGCCAGCTAGGAAACTCAGGCTAGTCCAGAACATCCGCCGCGGCTACGACGAACTCGACGTCGAGGCCGATTCTCACCCGATACTGTCGCCCGTTCTCACCGAGCTCGCCCGCGCCATCTGACCG # Questionable array : NO Score: 4.30 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:-0.5, 7:-0.60, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGCCCGGCGAGGTTCCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [21.7-23.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 27788-27630 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPGU01000009.1 Frankia sp. CeD CEDDRAFT_scaffold_8.9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ======================================== ================== 27787 26 100.0 40 .......................... CAACGGTTGTGTCCGACTGTTGGATATCGAGGACAGGCGG 27721 26 100.0 40 .......................... CAACACCGGTACCACCGCGGCCGGTCCGGCACATCAAGAT 27655 26 96.2 0 .......................C.. | ========== ====== ====== ====== ========================== ======================================== ================== 3 26 98.7 40 GTCGCTGATCATCCCTGGAGGGATCG # Left flank : GGCGGGCCGTGCTGCACGTCTGCTCGGCGGTCGCCGGCACGTCCGTCCTGGACCTCGGGTAGCGACCGGGGGGCGGAAGTCGGCGGCCCATGGTGGGGGCGAGCTCCGCGGCCAGATCGGCGAGGGGCGCACGGAAGATCATGGTCAGGGCGGGATGGGAACAGCAGGCCGCACGGCCCAGGCCCGCGTCACACCTGGTCGCACTCGTGCGGCCCTTCTCATGTCCCGCGGGCCACTCGTCCCGTCCGATCCCCAAGTCCCGTCCGATCCCCAAGTCCCACCCGATCCTCAGGCCGTTGACAGCGTCCACGTCTGCCGCATCCCGGATTTTGTCGAGACGGAGTGGCTCGGCGTCGCAATGGGCAGCCGGAGCTCGATGCTCATGGCTGTCGATCATGGCTCTGACCTGGGCCGTTGCACTACCGCCGGATCGCTGCAGAATCGGCCCACGATCCACCGCCGATCATGCCTTCAACCTGCGACTTTACTTTCGGGGTCGG # Right flank : TGGTGGGGGGCACGGCGGGCCGGGGATGGTGGGATCATGACGGTGAGCCTCAGGGACGGGAGAAGACTGTGATGTCCGAGGAAACCGCCGATCCGTCAGGTGAGCCCGCGGCCGAGCGTGAACCGGGGGCGCGGTCGCCAGCCGGTCGGGAACCGTCCGGGCAGCCGGCGCCCGATGCCGAGCCGGGGCCGGACGCCGACGCGGGGGCGGATGAGGCTGGGGCGACGTTTGCGGGCAGGTTCGACTTCCGTCCGGTCGACTGGGACGGCTCGTTCAGCAGGGTGTGGAGGGCGCGGCATGGCCAGGAGCTGACGAATGAGCTTGCCGCCGAACAGGAGCGGCGGGAGAACCGGAAGTGGTTCGAGCGGTATAGGCAGGAGCTGCTGGACCGGATGGATGCGGAGTCCGCCCGGGAGGCGGCACGGCGCCGGGCGGAGGACCGCGAGCGGGCGGTGGCGGAGGGCGGGCGGCCGGCGCGGGGGGCGGCGGACGAGGCGCTG # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTGATCATCCCTGGAGGGATCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA //