Array 1 18706-19120 **** Predicted by CRISPRDetect 2.4 *** >NZ_QTYW01000028.1 Roseburia sp. TF10-5 TF10-5.Scaf28, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 18706 35 83.3 16 AG............C.....A...-.T......... TAATCTTCCACAACGT Deletion [18757] 18757 36 97.2 30 A................................... TATATCCGGCAGAACCTGATTTTCATGTTG 18823 36 97.2 29 ..............................C..... TCTCATTAATTCCGATATAATTTGATCCA 18888 36 100.0 30 .................................... ACATAATCTTGCAAGAATTAGTATCACATT 18954 36 100.0 29 .................................... GATAAGTGAATTAGAACGACATTTCTCAA 19019 36 100.0 30 .................................... TAGGTATGCCATTGACACATATTAAACCGT 19085 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 96.8 28 GTTTTACAGTCACGTAATTTGTTTAGGTACTAAAAT # Left flank : CAAGTGCCGGATTCACCTGGCACAGCCGGTCTGTGATATCCTTGTGAACTGTGGATTTTGAAATTCCGTAATGCTTGGCAGCCTGCCGTACAGTTGCCTTATGTTCAATGATATAGTTTGCGATTTCCACGGCTCTTTCTTCAATATAAGCTTTCAAAAAAATACCCCTGCATTCCTGTGTTTGTACAGTTTATGCAAGGATATGTTTGCTTATTACTTACTTTCTGACTTACTTCCCACAAAGACTCTTCTGTCACAACCTGTCCCACAACAGTTCCATCGGGTTTGACTCCAAAATAAAGTTTCCCGTGCTGATGTTTGTTCAAAATTGCACAAATAGAATGCATTGTTTCTTTTAATTTACCGGTCGATTTTTAATTCCCAAGTTTCCTTTTCAATACCAAGATTCAAATCAACACCTGCCTTCAACACATATAATTAAGTTATATACTCTTAATCATATTATTTATCAAAATTACACTTTAATTAATCTTAGTTTA # Right flank : TATCAAACTTAGTATCCCCTACTTTTGTATGCCATTGCCCTTGAGTTTATTATACCATTTTTCATGCTTTCAAAAAAGCTATTTCTGGCTTTTTTTTCTGTATCTTCCCATCTATCGTTCAACATTAACGTCTGATTTATCAATTTACAGATAACGTTATCTTCCACTGTATATAAATATTCCGTTTGCCCTATGTGTTGAATAATCTTCTTCAAAGTCTCCTGCAATTGTTCTTCCGAAAATCTCCTGTTGCATGGATAATTATTCTCTATATATGTTTCTATTTCATTGAACTCCGGCATTTGAAAATCTACTTCTCCCAATACCGTTATTCCTGAACATAGCTTTCCGTCACACCCCACATATCCATCCAGGCTTGTTGACAAAATAAAATAGACATCATATCTGATACAGATTTGTTGCATTTTCTGTAAAACAACTTCATATTCTTTTTTCGAAATTAAATGATCAATATTTTCTACTATGATCAGCAATTTTCT # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:-0.23, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTACAGTCACGTAATTTGTTTAGGTACTAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 1 109356-105220 **** Predicted by CRISPRDetect 2.4 *** >NZ_QTYW01000007.1 Roseburia sp. TF10-5 TF10-5.Scaf7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 109355 32 100.0 34 ................................ TTTGTGACGGCCGGTTTCCGCGGGTGCCCTTATG 109289 32 100.0 34 ................................ ATTTACCGGTCGGAATAAATATACGACATCTGTC 109223 32 100.0 33 ................................ GCCAAGATAGTATCGAAGATAACGATTACCAGC 109158 32 100.0 35 ................................ AGAAATTGTAAAGGAGATTGAAAAATGAAAAATTC 109091 32 100.0 35 ................................ CTAATACGGACGATAGTGGCACAGAAGATGGTACA 109024 32 100.0 34 ................................ CGTGGTCTTGAGTTCTAAAAATTGTTCCGCTTTC 108958 32 100.0 34 ................................ GTTTGTAGGTGGTGTATATGATAAATAGCAATTT 108892 32 100.0 34 ................................ ATCGGAGTTGAAAGAAGAAGCGGTGTTGCAGATA 108826 32 100.0 36 ................................ CTATGTTCTCTCATGGATAGGCATGGACCCGGTGGT 108758 32 100.0 34 ................................ ATTACTGATGTCGTGGCTGCTCTTGAAGACCTGG 108692 32 100.0 35 ................................ GTCAGCCCTGTGATCATCTCCTGGCTTGGGATTCC 108625 32 100.0 35 ................................ GTCAGCCCTGTGATCATCTCCTGGCTTGGGATTCC 108558 32 100.0 35 ................................ GTCAGCCCTGTGATCATCTCCTGGCTTGGGATTCC 108491 32 100.0 34 ................................ CATCTAGGTTGATGTCGTCATCGATGAAGCTGAC 108425 32 100.0 33 ................................ CAAAGACGTAATCGCGTCGGACGTGCACGACAC 108360 32 100.0 33 ................................ CGGATGGATGCGTATGCAGCTCTGGCGATCGTC 108295 32 100.0 33 ................................ CGTATGGCATTGCTGTCATGATGGTTCCGTTCG 108230 32 100.0 34 ................................ TCCATCGTAAACACCACAGAGCCGCCGCTCCTGA 108164 32 100.0 33 ................................ ATGCCTGCCGAGAAATGGCTCGCGGTGCAGTCC 108099 32 100.0 33 ................................ AATGCAAAGCAGGCAGGAGACATGCTGACGCCC 108034 32 100.0 33 ................................ GAACTACCAGCATGACCAGCGCCTTGCCTTCGG 107969 32 100.0 33 ................................ GTCCAGAAACACAAGGACAACTGTCCTTGTGTC 107904 32 100.0 34 ................................ TTGATCTATAATGAACTAGAACTCATTTCCACTG 107838 32 100.0 36 ................................ ATCAACCACCCATACGATAAACAAACGTAGTAAATT 107770 32 100.0 33 ................................ AAAACCGCAATAAACAAACTCTGCCAGACATTG 107705 32 100.0 34 ................................ AATCGCCTGATTCTTATATACGATCGCTCCTCCC 107639 32 100.0 33 ................................ CGGTGTATCCACTCATATTCCACAAGCCCCCTG 107574 32 100.0 34 ................................ TACAATGTAACCGAAAAAACAATTGATGAAATTC 107508 32 100.0 34 ................................ ATAGGGTACCAGACCTTTACCGCGACAAACAACT 107442 32 100.0 36 ................................ TTTCGTCATGTATTTGACTATGTAAGTGGCAACCTT 107374 32 100.0 35 ................................ ACCTATACCACGAATAAAAATAATCAGAACAATTG 107307 32 100.0 34 ................................ AATAAACATTGATACCAGTTTAACGAATAGTTCT 107241 32 100.0 35 ................................ TACATAACTAAGAACTACCCACCTATGATGGCATA 107174 32 100.0 33 ................................ CCGTACGGACTGTTTTAAAAGTCGCATAAACAC 107109 32 100.0 33 ................................ TATTTCATGCATAATTATATCACCACCTTTATT 107044 32 100.0 36 ................................ TCTGATATAATCAATCAAAAGGGGGATTGATCAAAT 106976 32 100.0 33 ................................ TATTTCATGCATAATTATATCACCACCTTTATT 106911 32 100.0 34 ................................ CTGCAAAAGCATAGATAACTTCTGCACCATTGTT 106845 32 100.0 33 ................................ TGAACAAGGTTTATTATCAGCTTCTTGACTAGT 106780 32 100.0 34 ................................ CCGAACCATAATACTTGATCAGAAATGCTCTAAC 106714 32 100.0 34 ................................ TGATATGACTTTGACGGATCAATCTCGATATTGC 106648 32 100.0 37 ................................ CCGGATACGATCGAAGAAGCAATCATGCAGGACGGAG 106579 32 100.0 36 ................................ CACTTCAACTATGGTTAAAAGTTATGCCGATGCGGT 106511 32 100.0 35 ................................ TTACAAGACTTGAACATTTGCAAGAGGGAAAAGAA 106444 32 100.0 34 ................................ TTCTTGGCGGCGAGACGTACAACCACAACGCAGC 106378 32 100.0 34 ................................ TATCGAAAAGCAGAATACGGACGACCCCGATGCA 106312 32 100.0 34 ................................ ACAAAATAAGGGCAAACATTACAGTCTGCCCTTT 106246 32 100.0 34 ................................ CGGTATTTTCATCAATTTCCCAATCCTTAATTAA 106180 32 100.0 33 ................................ AATCATTGTATCTGGGGAATTGCTCCAGATACC 106115 32 100.0 34 ................................ TACTAATTACGATAAAATTCACTCTTGGCATCTT 106049 32 100.0 34 ................................ ATCATCCTCAATAGGATTGTCAATCTGACCTTTT 105983 32 100.0 36 ................................ GCGGAAAGGGATTAAGGGGCTTTTTGCCCCTTATTT 105915 32 100.0 35 ................................ ACCGAGGATGGCGAACAGCTAATCGTGGCGCTTTG 105848 32 100.0 35 ................................ AATACCTCCGTATGTCACGCTCCGGCTTGCCAGGT 105781 32 100.0 36 ................................ TTGTATCCATCTGATCATCAATAGCTTTATCATGGT 105713 32 100.0 34 ................................ TGGAAGTCGGATTGACGGAAATGCCGACAATGGT 105647 32 100.0 35 ................................ AGGAATTTTTGAGATACAGGAAAGGATAAAACATG 105580 32 100.0 33 ................................ CTTTGTCTAAAGTCCCAGTTGCCGTCTTATAAA 105515 32 100.0 34 ................................ CAGAATAAAGAGTAATCATAAAACCTCCTACATA 105449 32 100.0 34 ................................ ATAGCAGATACACGAATGAGGAAATTGCAACCCT 105383 32 100.0 33 ................................ ATCGGAAGTGCTCTAATTTTGGTGTAGCCGGAA 105318 32 100.0 35 ................................ CTTGACTTTGGACGTTTATTATCCACTAACCGTTA 105251 32 90.6 0 .....................C.....A...A | ========== ====== ====== ====== ================================ ===================================== ================== 63 32 99.9 34 GTCGCTCCCTTCGCGGGAGCGTGGATTGAAAT # Left flank : CCGGTATTTTTATGGAAATGAGGAATCCAAATGCTTGTTTTAATTACTTATGATGTAAATACGGAGACGGCTGCAGGAAAAGGCCGCTTGCGAAAAGTGGCAAAACAGTGTGTAAATTATGGAAGACGCGTTCAGAATTCGGTGTTTGAATGTATTCTGGATAATGCACAATGTGTGCTGTTAAAGTCGATATTAACGGATATTATTGATGAAAGTGTGGATAGTTTGCGATTTTACTATCTGGGAAATAATTATCACACAAAAATTGAACACATAGGTGTTGATCGGGGAATTGCTGCGGATCAGACGCTTATATTGTAAGGACTATGGTGCGAACGGAAAGTACACATAAAATACTGGAGGGATTCGCACTTGAAATATTAAATAAAAGGCATTGAAATGACATTTCTATGAATAGATAGAGATGGTTATTTTATGTTATTGCTGACAAAATATACAGTATTATACAAAGAAAATGAAATTTGTTGTATAATATTGCT # Right flank : GAGAATGACATAACGATGTATGGTATTCAAACTTTGGTTAGGAGATTTTATCAAAATTGTTTTTTGATTTCATAGGAAAGCTCTTTCCCATTTTTTATATTTTTGGTATTATATTTGTTGTGAAAAAATGAAAGAAAAATAATGCCAAAAAATTTGAATATTTTATGTGAAAAAAGGTGGATAAATAGTATAACAGAGGTTCTCATTTTCAATAGGAGGTGAACAACTTGGAAAAAAGACGCAACCTTCCAGGCCTGACACGTGAAGCAGAAGAACAAAATCTGCAGGAAATCATACAGATTGCACAGAATAACCTGGATCATGCAAAAGCGGACATACGAAAACTCAATGCGGATCTGGAAGACCTGCTGGATGTGTACGATGCGCAGGATAAGGAAGGACTTGCACTCTGGAACAATGCAACAGTGCGGCTGCACGAAAACGAGCATAATCTGGTGCGTTATGAGAAAGCACGAAAGAAACCCTATTTTGGTCGTATT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTTCGCGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.80,-6.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //