Array 1 50-793 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYXY01000022.1 Salmonella enterica subsp. enterica serovar Typhimurium strain CVM N38921 N38921_contig_22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 50 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 112 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 215 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 276 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 337 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 398 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 459 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 520 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 581 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 642 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 703 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 764 29 96.6 0 A............................ | A [790] ========== ====== ====== ====== ============================= ========================================================================== ================== 12 29 99.4 36 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCAGCGGGGATAAACCGCCACGTTCGGCGATGTTGGCCCCATCGGTCCAG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.25, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1785-47 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYXY01000027.1 Salmonella enterica subsp. enterica serovar Typhimurium strain CVM N38921 N38921_contig_27, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1784 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 1723 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 1662 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 1601 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 1540 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 1479 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 1418 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 1357 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 1296 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 1235 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 1174 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 1113 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 1052 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 991 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 930 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 869 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 807 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 746 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 685 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 624 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 563 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 502 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 441 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 380 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 319 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 258 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 197 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 136 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 75 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 29 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GAACCGCTGGCGGGCTGATTGGTCTGCAACCACGTGTTCCCCGCGCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //