Array 1 98485-99241 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP020768.1 Staphylococcus lugdunensis strain C_33 chromosome		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
     98485	    36	 100.0	    29	....................................	TGTTCGTCCATTTGTCTTTAAAATTATAT 	
     98550	    36	 100.0	    30	....................................	TTGGTGGCGGAGCTATCATTGCAGTAGCAG	
     98616	    36	 100.0	    29	....................................	GTATAAAAAAACACCGTATCAACTAAGAT 	
     98681	    36	 100.0	    30	....................................	ATTATGACATCAATAGTATCACTTTCCCAG	
     98747	    36	 100.0	    29	....................................	TGAAGGTAAAGACAGAGGACATAGTCCTA 	
     98812	    36	 100.0	    29	....................................	CGGTTTAGGTGCTGTTGCAATGGCTGGAA 	
     98877	    36	 100.0	    30	....................................	GTTTTTCGAATGAGTTGATAGTGACGTCTG	
     98943	    36	 100.0	    30	....................................	TCACATCATTCGAACGTAAGAATGAGGCTG	
     99009	    36	 100.0	    29	....................................	TCTGTGTTCAATCCATGCAGTCTGTCCAA 	
     99074	    36	 100.0	    30	....................................	GTATTGAAGATGTAAGAAAAGACACGGTTC	
     99140	    36	 100.0	    30	....................................	ACTAAAAACTGACTGCTACGGCAGAGATCA	
     99206	    36	  97.2	     0	.............................A......	|                             	
==========	======	======	======	====================================	==============================	==================
        12	    36	  99.8	    30	GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATAC	                              	       

# Left flank :   CTGGATTTGTCGAAGCAGTCAGTCGTACGGGAAGTATTATTGGGACATTTATTTTCCCTATCATTCTAGCTGCAGTAGGCCTTACCAACACCATGTTAATCTTAAGTATCGTACCATTAGTTGGATTAATTATTACAAGCGCAATCAAATGGGAACCTGTAGGGAAAAATGTTGAAGTAGAATAGAAAAGATATACCATGCGTACCTGTGTAGCAGCCTTATTACTGTTACATAGGTATTTTATGCTTACTTTTTGTTTGTCACAAATAACCTGTGTCATCACAATACTGCTATTAAATCTATTTGTATTTATAGGATATTAGATTTTGCAAATAGAAAAAGAATAGTAGTGTTTATTAAAAGGGAGTAGCATTTTTGTTTGTCAAAGTATATATTATAGATAGTTAATATGAGTTTTGGTATTTATAAAAATAAGCATATTAACAAAGAAGCTATACAGTAGAGTTTAAAATCTATAAAGTTCATTTTTAGAGCTAGAG
# Right flank :  CTATGTAAAATCGTGTTGCTTATTATACATCTTATCTATAGGACATTGAGAGATTATTGAAAATTAATTTTCGAAATATTATAAAATTATATTGATTTTTTAATTCCTATAAATTATAATTGAATTGTAGATACAAGTTTAGCTAACTTGTACTTATACCTAAAATTACAGAATCTACTGAAACAAGACAATATGTCGTGTTTATCCCATCAATTTATTGGTGGGATTTTTTTATGTTTTTAGCAAAAAGTAATACCATACTTTATATTTTTAAATTATAATAAAGATATAAATAAAGGTGGGTGTATATAATGAATCAAAAATTTATTTTAGGTTTAGATATTGGTATTACATCTGTTGGATATGGTCTCATAGATTATGAAACTAAAAATATTATAGACGCAGGTGTACGTTTGTTTCCTGAGGCTAATGTAGAAAATAACGAGGGCCGTCGAAGTAAAAGAGGTTCTCGAAGACTTAAGAGAAGAAGGATACATAGA

# Questionable array : NO	 Score: 6.25
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:72.22%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-3.60,0.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.28,0   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
//