Array 1 116655-115524 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZBD010000004.1 Salmonella enterica isolate 3653_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 116654 29 100.0 32 ............................. ACCTGCGCATGTGTCACAGTGCCGCCGTTTGG 116593 29 100.0 32 ............................. AATTACTGGTTGGCGATACGGTGGAGTTAACT 116532 29 100.0 33 ............................. CCATAATCAATCCCTTTGAAATATTAAACGCGC 116470 29 100.0 32 ............................. ACCAGGGGGATTTGGAATTTAATGACGTAATT 116409 29 100.0 32 ............................. TGCGTTAGAACAAACCGTGATTCCGAAGGCCA 116348 29 100.0 32 ............................. AAAACGCAGGCGCGCGCGATAGTAGACAGTGA 116287 29 100.0 32 ............................. GCTACAGCGTTGTTAACAAAACGTGGGAAACG 116226 29 100.0 32 ............................. CGCCTGTTTTGGTGGTGGCTGGATTTTAAATC 116165 29 100.0 32 ............................. CCGGGCTAACTGGCAGGGATATCAAATTCACA 116104 29 100.0 32 ............................. TTGGCGTGGGCAACATTCACGCAAAAGCAGAC 116043 29 100.0 32 ............................. TTTTCTTTCGCCAGCTTAACTGCCGTATCCAG 115982 29 96.6 33 ............................T GTGTCGGAATATGCAGGCTGATTTTTCGTCTGC 115920 29 100.0 32 ............................. TGGTTTACGGAGTCCGAGGAAGGGAGTACGAA 115859 29 100.0 32 ............................. TACATAATTTATGCTCCGTAGGTCAGCGCATC 115798 29 100.0 33 ............................. GCTCATTGCCAGCTCGTCAGGCTGACCGGTTGC 115736 29 100.0 32 ............................. CAAAACAACTTTTTCACGCGCCCAGCGGAATA 115675 29 100.0 32 ............................. CGGAGCAAAACGTTCGGCAGCATGATTTTCGG 115614 29 100.0 32 ............................. TTTGTTACCTATGACTACACGGCATGGCTGAA 115553 29 100.0 0 ............................. | A [115526] ========== ====== ====== ====== ============================= ================================= ================== 19 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCGCCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCTTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGTCGCCTTGCCGTCTGGTTACTGGAGATTCGGGCCGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAGATGATTTGGCAACAAATCACGCAGCTTGGCGGTTGCGGGAATGCCGTCATGGCCTGGGCGACCAACACGGAATCAGGATTTGAGTTCCAGACATGGGGTGAAAACCGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGATAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGTACTACATCGCGGCTACGGTGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 134824-132903 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZBD010000004.1 Salmonella enterica isolate 3653_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 134823 29 100.0 32 ............................. TCGTAAATCTGTTTCAGTGTTTTAGCGCGCAG 134762 29 100.0 32 ............................. TCAGTGTTAGCCGTTGAAACGGCAACTATGGA 134701 29 100.0 32 ............................. CCACTTGTTATGACCGGCATTATGTCGGGCCG 134640 29 100.0 32 ............................. GTAATTAATTCACCCAAAACCACTATTAACGC 134579 29 100.0 32 ............................. ACACCGTACTGAGTCTGAATGATGTGATTGGC 134518 29 100.0 32 ............................. GCATGTAAAATCACAGGCCGTCAGCCTAACGA 134457 29 100.0 32 ............................. CGTGCACCCGGCATTTTCAGGGACCTGGTCAT 134396 29 100.0 32 ............................. CTGCCGCTTCTTTTCTCTATACAGATCTTAAA 134335 29 100.0 32 ............................. ACGAAAATGAATATGTGCGCTGGCGATTTAGG 134274 29 100.0 32 ............................. TTCTGGCAATGGTCTTATTTTTTGAGGTTTAG 134213 29 100.0 33 ............................. CTGAATTGCTGCATCCAGGCGATCCGACCATGC 134151 29 100.0 32 ............................. CGGGCGGACCCGCTAATATTTTGAATAGGCGC 134090 29 100.0 32 ............................. CCAGCATCCGTAAAATTCTGATGGCTGACCAG 134029 29 100.0 32 ............................. CATGAACACATTATCTATTTTTCTGGCCCGTT 133968 29 100.0 32 ............................. GAGTGTTACATCAATGCCTTTAACTGGATGGC 133907 29 100.0 32 ............................. TGCGTGCCGTTTTTCATGGCATTTATCGCAGT 133846 29 100.0 32 ............................. GCTTGCGCTGCTGATATTGCCGGTTTTATACG 133785 29 100.0 32 ............................. GGGCTCCCTACAGAGAACCCCTTTGAACGTAA 133724 29 96.6 32 ............................C TGAACTGGTACAGTTTGCCACCGCTAACTATC 133663 29 100.0 32 ............................. GGTGAATGATTGGTTAGTGGCTGAATACATCG 133602 29 100.0 33 ............................. CTGACGGGGTGCATTTCTCAATACCGGTGACAC 133540 29 100.0 32 ............................. CTCATAGAAAAATGGGACCCACGTTTCTTTAC 133479 29 100.0 32 ............................. GTAAAAACGGCGGCTGATCTTCCGGTAAGTAG 133418 29 100.0 32 ............................. CCTCCCGGGAGACGGTCAGTCGGGCGCTGTTA 133357 29 100.0 32 ............................. GCGGCGAATATCATGATCGTTGTCCCGATCAG 133296 29 100.0 32 ............................. CACTCGATAAGGATGAAAATACTGTATATGAA 133235 29 100.0 32 ............................. GTTGGCTGTAGTGTTGCAACGCTTGAGGAAGC 133174 29 100.0 32 ............................. ATGCCGTACATAGTCCCCATATGGTTTGTGAT 133113 29 100.0 32 ............................. GAGTTTGGGGGCACTATGAAGGGATCGATGCT 133052 29 96.6 32 ............T................ ACGTTTTGCGAGCCATCAGAAACCTTAAATGC 132991 29 100.0 32 ............................. AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 132930 28 89.7 0 ............T...........G-... | ========== ====== ====== ====== ============================= ================================= ================== 32 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGAATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGCGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //