Array 1 386637-384174 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNCZ010000003.1 Bifidobacterium pseudocatenulatum strain D6t1_180914_B11 NODE_3_length_463160_cov_23.7296, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 386636 33 100.0 34 ................................. GGCGCACGCTTGTGCAATGCACAAATGTGCAATA 386569 33 100.0 33 ................................. TGCTCGGCGTACGCGTCATCCCGGACATAATCG 386503 33 100.0 33 ................................. TCGTTGGAGTTGATGGTTCCGTTACGATGCGCG 386437 33 100.0 34 ................................. GCCATCTCCACGAAGTTCTTCGCCCATGGTCCGG 386370 33 100.0 35 ................................. TCCACCTCGGTAGTCGGGGCCGATGATGTGTTTTG 386302 33 100.0 35 ................................. AATGGAATCTATGGCACGCAAGCTCAGGACGTGAT 386234 33 100.0 34 ................................. CTGGCGCAGACCGACGACACCTTCAGGGGCGTGA 386167 33 100.0 34 ................................. GAGTCCCGCAAGGGCACGAAAAACACAAGCCATA 386100 33 100.0 32 ................................. AGGCCGTACGGGACACGCTACAATACCGCCTA 386035 33 100.0 34 ................................. CGCGATATCCGCAAACCACGTGCCTTTATTCTTC 385968 33 100.0 35 ................................. AAGGGCGTGACGTTGCCGTGGTTGCGCAAGGCCAT 385900 33 100.0 35 ................................. ATGGACGCCAAGGAACCCTCTTACGTCTACCCGTA 385832 33 100.0 36 ................................. CAGGCGAACACATAGCCGGTAATCGGGTGGCCTCGT 385763 33 100.0 36 ................................. TTCATGTCCTTGGCACGGATGGCCTTGCTAGTCACA 385694 33 100.0 32 ................................. ATAAGGTCGTCTTCGGCAAGGATGTGAAGACC 385629 33 100.0 34 ................................. AAAATCGCTATGTCCTGCGGGCTAGCTGCAACCT 385562 33 100.0 38 ................................. AACACCAGTGTTGACTACCTCATGGGTCGCACCCTTGA 385491 33 100.0 33 ................................. GACATGCAGACTCTCATGATGGAATTGGCGCAG 385425 33 100.0 34 ................................. TCGGCTGAACGTGTTTTGCAATGCTTGTGAGCGA 385358 33 100.0 36 ................................. AACCTTGCCAACGGTCTGATCGGTGTCATGGTGCGG 385289 33 100.0 37 ................................. GTGGAATGATGGTTACATTATTGTTTGCCGGTGCTGG 385219 33 100.0 34 ................................. GTATCTTTCGCATGTTTGTTATCCTTTGTATCTG 385152 33 100.0 35 ................................. ACGTCGGTTTTTCGTGCGAAAAGCATGTTGGATTG 385084 33 100.0 36 ................................. GCCCCGGAAATAATTCAAGTCCAATCGTCCGGCATC 385015 33 100.0 33 ................................. AACGGTTATGTGGGCCAATGTGTGCTCGCGTTG 384949 33 100.0 37 ................................. ACGGGAACTATTGTTGCCCAAGTCGCGGGTTGAATCG 384879 33 100.0 35 ................................. GTTCATAGAGAGCACCCAATCTTGGGTGCTCTCGC 384811 33 100.0 33 ................................. TACAAGCATCGCGGCTCCATCACTCCGAATCCG 384745 33 100.0 36 ................................. ACGTACTGGAAAGTGCATGAGCTATACGTGCGTAGC 384676 33 100.0 33 ................................. AAGGTGGAAAGGCGTTATTATGTTTAATCGCGG 384610 33 100.0 32 ................................. AATCCGTCATCGCCCGCGTATTGGTCGATGAG 384545 33 100.0 35 ................................. ACGATGGCGCGGGCAATAGTAGCCGTTGCACGTAA 384477 33 100.0 36 ................................. AAGGCGGCGGCACCACAGATCGCCGCATTAATGGAG 384408 33 100.0 35 ................................. GCCGAGGATTACGCCGGATACCCGCAAGAGTACGT 384340 33 100.0 32 ................................. GTCAACATGATTGGGGTCTAGCGTGTAGACGG 384275 33 100.0 36 ................................. CCCGACAATATCAGGTTTCTCAGCAATGAGGTAAAC 384206 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ====================================== ================== 37 33 100.0 35 GTCGCTCTCCTCATGGAGAGCGTGGATTGAAAT # Left flank : CAATACCGATGAGGACAGCCTGCGCTTTTATAAACTTGGCGCTCGATATGCGGATAGGATTGAGCATTATGGACGTGAACGGAGTTTGCCGGTTAATGATGTGATGATGATATAGCACAGGCAAAATGGCATGGTGCCATAACGATATGGTGTGGGGTATGCTGGGTTGAGCGTTTGAGTGTGCCGTCCGGTATTCAGAGTGTGTTTTCTAGCCAGCAGTATTGTGTTTTCGGCAAGGTGGCCGGTCTTGGAATGGTGTTTGTGCGAAGTGTAAGCGCTCATGATAAGGGACGTCTTTCGCACCTGAAAAACTATCGAAATCCGAATTGTGATTTTCGTGGGGCGTTTTGAAAACTAAATAATGGACATTAAAATGAGACAGAAAGCCAGTTGCTCGTTTTAGACATGTTGTTCGTCGTATCGGCGGTGTTGTTTGATATGCTTAAAGCTAGGCAGCTGGCTTGCGTCTCAAAAAGCGGACAAAAATGTCCAGCTGCACT # Right flank : CGGTGTCTGCATCGTTCCGGCCGCCGCGTGGATGTTGCTCTCCCTGTTTATGTCCAGTGTTCCCCGCACATGCGGGATTCCACATGTGCGGGACTGCTAGCAACGGAAAACCAGGGTTTTTGTCCGCTCGGGGCGACTTCAACGGTAATACGAGCAGGAACTGCGACTGGGTGTTTCGCATGGGGTCGCTTCTGAAAGCTTTGTAAAAGAAATAGTGTATGTGAAAACGGTCGGGTGGGTGCGGATGCACGAGAAATTGGCTAACCTGTCGAATTTCTGTTTTACTTTGGTCGTTCATCTCGTGAGTGGTCGTCAAGCTAGACATATTGTGTCTCATGGGATGCAACATGTCATATGGAAATACATATGACTGGCGAATATCGCCAATGGTTCAGCCGGATAAAGGACCGGAACGCGAAAGCCCGAATCAGCGCGAGACTCCGATTGCGCTTCTAGATGGGGCGGCCGGTGGGTGACCTGCATACGGTTGGTGACGGGGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCTCATGGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.30,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //