Array 1 45460-45214 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGBF010000015.1 Campylobacter canadensis strain L277 L277_contig00015, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================== ================== 45459 37 97.3 32 A.................................... CCATAAGGCTTTCATATTAAAACTAACCTCAT 45390 37 100.0 33 ..................................... TTGTAATCAGGCTTAAATTCTTCATGGTATTGC 45320 37 100.0 34 ..................................... CGCACGGCGTGTGTCCTTTATTATCCACTCCCCT 45249 36 91.9 0 ................................-..GG | ========== ====== ====== ====== ===================================== ================================== ================== 4 37 97.3 33 TGTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAAC # Left flank : TTTTACCTGCCTCAACGGCGTATTGTGTGGCGATG # Right flank : TTCCTGTTACATTTGGGATATAATATTTTCTTAAAGCTATTTAAATGATGTTATTAAAAGAATTATTTATTTAAAGTTTTTAAAAGCTTAATATGCCTTCTATTAAAATATAAAAAGTAATAAATATGATAAAAAGTTATAAGCAAAATCACCACACTTATTTTTTAGTTTCTAATATTATTAGCACATTTATTAATTTTTATATTTATAAATAATTAAAAAATTAGGCAACTTACCTTAGATAAGAGTTTTTAACATTTTATTACTTTTATATATAGCTTTGAAAGTTAGTAACAAAAAACAAATACGAATAAGGATTAATATTGTAAAAAAATTTAATTTTTTTTATTAATACTGTGTCTTTATTAACCGTGGGGGGGGGTATAATGATATGAAATATAAAGAAAGGAGTAAAAGATGGATAAAGCAAATGCAAACCATAAAGCTAATCAAGCAAATGCAAACAAAGGTAGTGCTGGACAAAATAAAGCACATTCTCA # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:0, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 1 103908-103581 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGBF010000005.1 Campylobacter canadensis strain L277 L277_contig00005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== =================================== ================== 103907 38 100.0 34 ...................................... ACAAGGAACATAAGTCTCTTGTAGTTAGCAAATC 103835 38 100.0 34 ...................................... AAGCTATTGGTGGTGGCATTCCTAATCCTATAAA 103763 38 100.0 35 ...................................... GCTATTAATAAACAAATTAATATTAAAAAAGATAT 103690 38 97.4 34 .....................................T GTGCAACAACATCACTTCTTCTTGAAGTTTTTAG 103618 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== =================================== ================== 5 38 99.5 34 GTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAGA # Left flank : AGCAAATCGTGGCTGGTGGTGTGCTAGAGCTTG # Right flank : GCTAGATAAACTTGTCTAGCTTGTAAGGATTTGAGCTAACTTAAAGTTTGCTTATTTTTCCACTTTGAAAATTTCGGCAAAAAACAGCCGTTTTGTGGAAAAATAAGAAAAATTTAAGCTTATGGTTAAGAATTTTAGCCTAATATATCAACTCAAACCTAATTCTAGCAAAATATTTAAGAGTTTGAAATCACCACAAGGTTGGTAAAATATCGGGCAACTGGCTTAGCCACCCCGATAAATCTTATTAGTTAATCTTTGCTAAATAAAATTCCATTAAAACATAAATTTAGGAGAAATCATGAAAACTCACATTAGTATAGATATGGGAGCGAAAAATAATGGGGTGTTTTTAGCTCATACAAAAGATGGCAAGATTATAGATAAAACTGCTACGAATTATATCTTTGAACCATCTTCTATAAATTTTTTAAAAAAAGATAGAACCAAGAAAAGACATCAAAGAAGAGGTTTTAAAAGAACAAGACTAGCTAGAAGGC # Questionable array : NO Score: 3.03 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.42%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.40,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 36-772 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGBF010000008.1 Campylobacter canadensis strain L277 L277_contig00008, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 36 36 100.0 37 .................................... TATGGTGTATCGTTTACAACGATACATACTCCATAAG 109 36 100.0 35 .................................... CTCTTGTTTAAGACAACAAAAGCAAATGAACAAAT 180 36 100.0 33 .................................... TCATAACCTAAACTATTAAAATAAAAATCAGAG 249 36 100.0 33 .................................... AAAAAATATTTGGAATTCATTTTTTACATTTAC 318 36 100.0 35 .................................... ACATTGTTCGCTTCGTCGTTCTCCAGCCTTGAAAA 389 36 100.0 34 .................................... TGAAATCTTTTTTAAGACCGATATAGTGACTTGT 459 36 100.0 33 .................................... AACATTATTTCTTTTTTTATGAAATCTTTTTTT 528 36 100.0 31 .................................... ATTTATATTTAAATCAGCTTTGAAAATATAA 595 36 100.0 33 .................................... GGCATTCGCCACCACAGAAATATATTTGTTTCC 664 36 100.0 37 .................................... TTTGATAAACCTATACCTTTTATCACTTTGTCTACTT 737 36 91.7 0 ..C......T...A...................... | ========== ====== ====== ====== ==================================== ===================================== ================== 11 36 99.2 34 GTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAAC # Left flank : TAAATAACTTTCTAATAATTGCAATTCACTAATTAG # Right flank : CATTCGCCAAATTATTTTCAAAACTTTCATCAGCTTTTGTGCAAGAAAATTACTATTTATTAGATTAGTAAAAAGAAGTAGCAAAAATGATTAAGCTATCTAAATACGAAAACGCAAGTAAAAATGAGATTGCAAAAGTAATTGATAAATATTTTGCTAAACTTAAAGAATAAAAAAATCAAAAAAACACAAAAAGCTATAAAGCAATTACAAAAGTTTTTAATCAAAGCTTGAAAGCTAACAAAACTAAAAATTATAAGTGGCTAAAAGAATATTAAAAGTAATGAATTTATAGAAGCACTAAAAGAAGCTGAAGAATTAAAATAGCTTATTTGCGTGAAGAAGTGCAGTATTTAGAAGTTAAAGAATTTGTTAAGGAAAGTATGAAATGATAAAGCTAATTATTAAAGAACAATAGCATATAAAATAGCTTTAAAAAAATTAGGTAAATATAATAAAAAACCAGCATACAAAATCATTCATTGTTTAGCTAATGCTGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.10,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 1 580-38 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGBF010000081.1 Campylobacter canadensis strain L277 L277_contig00093, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 579 37 97.3 35 .......G............................. TTTAATGACAAGAAGTTGTATTCAATTGCCTATGG 507 37 100.0 35 ..................................... ATTGGCATCGTTGGCACCGATTCAGCACTCGAAAC 435 37 100.0 35 ..................................... TCTTCTAAAATTGAAGTTTCAAGTAGCTTCATCTC 363 37 100.0 35 ..................................... CAAAATTTGCGATATAATGACGATAATGAACTGAA 291 37 100.0 35 ..................................... CGATAAACCGAATTGTCTGCATCTTTAAATGCTAG 219 37 100.0 35 ..................................... TATGAAGTTGGAAAAAGATGTTTAATTCGTACTAC 147 37 100.0 36 ..................................... ATCAACGTTAATTAAATATTCGTTATTAACATATGA 74 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 8 37 99.7 35 GTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAG # Left flank : AACACACTGCTTAATCCGTTCTTTAATGTAAAAATACTACTTGCTAAAGAATATAGCTTTTTGCCAAACTAACAATTAAGACTTACAATAATCAATATATTTTAGATAAATAATTTGGTTAGAGAAATTAAAGAAGTGCAGTAAGCAAAAGATAAATAAGAAGAAATTG # Right flank : GAGGGTAATGAAAAGGTTTTAAGGGCAAGATTAAGCGA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.30,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 1 34-427 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGBF010000009.1 Campylobacter canadensis strain L277 L277_contig00009, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 34 36 100.0 36 .................................... CCATACCCCAATAATGACTCGTTGTGGTGATGTTCT 106 36 100.0 36 .................................... ATCAGAAGGCTTCATTTCATATCTATTATAACTTTT 178 36 100.0 36 .................................... TTTTTGTAGATGGTATCTACTCATAAATGCTTTTTT 250 36 97.2 35 ............T....................... ATAAGCCTTGTTTTGCTTTAGCTATTTTTTTATTC 321 36 97.2 35 ............T....................... TGCAGTCTGCCATTGGCATTCCGCACTCGTCTAAT 392 36 94.4 0 ............T......................A | ========== ====== ====== ====== ==================================== ==================================== ================== 6 36 98.1 36 GTTTAAGAAGATAGCCCCGCTTTAGGGGATTGAAAC # Left flank : GACAACTTAATATTTTTTAGCAGCTGATCTACCG # Right flank : ACTTAGAATACTTTGGGATAAGATAAAAGATATTAAAAATCCTATGTCGCACTGTACTACTGAAAATATCAAATTTGATGTAAATAAAGAACTTCAAAGTTGCTTAGATGTGTATCAAAATTATATTATAAAAAATGATGTTTTAGCTAAGTAGTTTTAAGGCTTTTGCCCTAGCCTACTTAACTTTTTGTATTAAATAGTTATTATAAACTATATTATCTTTAAAACTCCCTAAATTTTATATGCTTAAAAATGCTTTGTTTTACACCGTTTTCATCTTTTAAAACCTCTCTTTTTGTGGTGGCATAAACGGGTTTTAATGATTTTGCTTTAGCATAATTTATAAGCTTAAAGCATAATCCAAAATCACCGCTAATAAGCAAAAAATCACCTTTTTTAGTATTTTTATCAATGTATTCATAAAAATCCTTTGCGTATTCATCTAAGCTATCAAGGCTGGGCGGAACATTTGAAAACCTAGTTTGTAAATCCTTTGGCAA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAGAAGATAGCCCCGCTTTAGGGGATTGAAAC # Alternate repeat : GTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.10,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA //