Array 1 30781-31723 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBJM010000159.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 42 NODE_22_length_77621_cov_20.495703, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 30781 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 30842 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 30903 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 30964 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 31025 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 31086 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 31147 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 31208 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 31269 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 31330 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 31391 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 31452 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 31513 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 31574 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 31635 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 31696 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 47855-49697 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBJM010000159.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 42 NODE_22_length_77621_cov_20.495703, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 47855 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 47916 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 47977 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 48038 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 48099 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 48160 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 48221 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 48283 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 48344 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 48405 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 48466 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 48527 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 48588 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 48649 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 48710 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 48771 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 48832 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 48893 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 48954 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 49016 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 49119 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 49180 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 49241 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 49302 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 49363 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 49424 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 49485 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 49546 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 49607 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 49668 29 96.6 0 A............................ | A [49694] ========== ====== ====== ====== ============================= ========================================================================== ================== 30 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //