Array 1 945046-945805 **** Predicted by CRISPRDetect 2.4 *** >NZ_UKFB01000001.1 Klebsiella pneumoniae strain EuSCAPE_CZ012, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 945046 28 96.4 33 ..........T................. TGATCCTGAATGCCACCAACAGCAAGATGCTGA 945107 28 96.4 33 ..........T................. GATGACGACTACATGAGTATGGTGTCCGATCGG 945168 28 96.4 33 ..........T................. TTGATAGGATTGATGAAGGAAAAAACCAAAAGA 945229 28 96.4 33 ..........T................. CCTCTGCAGGCTATCGACGTCTCTAAAAACGTT 945290 28 100.0 33 ............................ CTGGTCAAGTTGGTTTCCTGGCGTGGCAGCGTT 945351 28 100.0 33 ............................ TATTTATTATCAGGATATGCCTGTGTGGGGGGC 945412 28 100.0 33 ............................ TCCAGCGAACAATGGCGGTGGATATGGCGGCGG 945473 28 100.0 33 ............................ CCGATATCCGCGAAAACGGGCTTGACGCGGTAC 945534 28 100.0 33 ............................ TGATCAGCGAGCTGCTGATTGATATCGAAATCG 945595 28 100.0 33 ............................ TTCCATCATCTGCGGCGGGATAGCGCTGCGGGT 945656 28 96.4 33 ............C............... CCTGCAGCTGGCCGTCGAGCTGACGGATGCCGG 945717 28 92.9 33 ..............T........A.... TTCATCACGTGTGAGCGGATTTGGCTCTATCCT 945778 28 92.9 0 ...................A.......T | ========== ====== ====== ====== ============================ ================================= ================== 13 28 97.5 33 GTCTTCCCCACATGCGTGGGGGTGTTTC # Left flank : TTAGCGTTGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGACTTGACGGCGCCGCGCAGGATAATAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCAGTAACTTCGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCTGGGGATGACAAAAGCGTTTTACCCCCGGCTGCGGGCCGGGCAGGCCAGTAGGGTAGACCGGTCCAGGTCAGCAGCAAATCGACGGTGGTGATATGGGGACATACTTTTTCGTTTGATGAATGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAATTGTTGTAAATCTGGCGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : TCGCCTTTCAAGTGTCGACAAGTAACGTCTGTGCGCATTTCTCAGATGAAAGGGGATTCCTGACGTAGAGGCATCAATGCCGTGATATAGTTATCCTTAATGTACATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATGTTTTTTGTATGATTTTACTTATAAATATTCGTGAACTATGTTTGTCCTATACTTTCTTTAGGGGCATCTAAATCATTCGAGTTTATTACTCGTCTGGAGATATTGTTCTTCATATTAATTATTTATAGCTTTTTATATTATTATTTTTGGCTTTTATCTTTAATTCAGTATGTTGTGGATGTTTTTGATTTTATAAAAAGTTATTTATAAGTTTCCCGGTTTTTAGTATTAATAAAGGGCACATGTTTTTTAAGGAAAAATTCCATGAGGCGCTTGATCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGTCCAGCGAAAACCCGGATG # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACATGCGTGGGGGTGTTTC # Alternate repeat : GTCTTCCCCATATGCGTGGGGGTGTTTC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 954560-955563 **** Predicted by CRISPRDetect 2.4 *** >NZ_UKFB01000001.1 Klebsiella pneumoniae strain EuSCAPE_CZ012, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 954560 28 100.0 33 ............................ CTATCCGCGTGGATCTGGGACGGCTGTGCAGCC 954621 28 100.0 33 ............................ TGGGCACCTGTAGTAAATGCGGGAAGACGTGCG 954682 28 100.0 33 ............................ TCAGCGCCTTGGTCATTTCGGCAATGAAATTAC 954743 28 100.0 33 ............................ TGAGTGGGGATGAGGCCCAGCTGAAGCCTCTTG 954804 28 100.0 33 ............................ TAACCCATGATAACCATTGTTAACAATGGCGAT 954865 28 100.0 33 ............................ CGACGGGGCAGGTTTACGTCTACCCGGGCAGGG 954926 28 100.0 33 ............................ CAGGTACCTGGTTGCTTCAAAAAGGAGAGCGGG 954987 28 100.0 34 ............................ CGGTCTCCTCTGCCCAGGTAGTCCCGTTGATGTA 955049 28 100.0 33 ............................ CACCGTGAAGCGTTTCATTGTTAATCCTCCATG 955110 28 100.0 33 ............................ TTCCTTAACGGTCGCCGCCGCTATTGCGTCCAG 955171 28 100.0 33 ............................ CTGAATGCAAATAAGCTGGTGAAATGGGGCATC 955232 28 100.0 33 ............................ CGGTAAAGCATGGTTGTAGTGAGTATCGCGCGT 955293 28 100.0 33 ............................ TTGTCGACCGTGTCGGACGGCTCACCGACATAG 955354 28 100.0 33 ............................ TACTCGGATAGTACAAACAGGAACCGGCTATGC 955415 28 100.0 33 ............................ GCGTGGACTACCAGGGTATCTAATCCTGTTTGC 955476 28 92.9 33 ......G.T................... CCCCGCTTTTGAGCACGCGCTGGCATTCGTTCT 955537 27 85.7 0 ......A...T.T....-.......... | ========== ====== ====== ====== ============================ ================================== ================== 17 28 98.7 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTGCGTGGACGAATGAAGCTGTGGTTTGTCGAACCACGGCCAAATGTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCGCAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT # Right flank : CTTGTGAGGGGTCTACCAGCATTGGCGTACTGGAGTCTTCCCTACACATGTGGGACTTAGCAATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGTAGAGGTAGGAATATTTTATTGCGATAGAGAAGGGAACTGTTTAAAGCAATAACGGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGTCACATGATTTAATACGCCAATTAAACCCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGCGTGTATACATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCCTACCGAAGGAAATATACAACTCATCTCCACATAAAAGGCCATATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACAGGCTACAAATTGGCT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //