Array 1 82511-78583 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCHJ01000016.1 Bifidobacterium asteroides strain 1460B Contig_16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 82510 32 100.0 34 ................................ TCCTTGAGCAGCTCCTTGCAGTCCCTCCATGCCA 82444 32 100.0 34 ................................ TGACTTGTTGGTCGAGCTTGAGTCCTCGATGAAG 82378 32 100.0 34 ................................ TTCATGGGCGTTTGGAACGGGATAGTAGCGTTTG 82312 32 100.0 35 ................................ CCTAAGATCATGAGCAACCTGGGCTACTCGGCGCA 82245 32 100.0 32 ................................ TTCGACCGGGGGCCCCAGGGCACCGTCCTGCA 82181 32 100.0 33 ................................ CTTGCGGTGGCTTTTCAGCAGCCAGCCGCAGAC 82116 32 100.0 33 ................................ CATTGACGCTGTTCCAGGACACGTTGCAGTCGG 82051 32 100.0 34 ................................ CAGATCGCCTGCCGCCATTTGACCGACTCTGCGT 81985 32 100.0 34 ................................ TGTTGAAATACCCTTTCGCCATCACATCAAAGGC 81919 32 100.0 35 ................................ TCCAATATCTTCAAACCGTATCAGCCGAAAGACCA 81852 32 100.0 32 ................................ TACAAGACCGGCCCCTTGACTTGGAGCGTGAT 81788 32 100.0 35 ................................ ACCCCGATGAAGACCCCCGAGGGTTATGTTATCTT 81721 32 100.0 34 ................................ CGTTACATGCTCAAAGTAGAAGTTGTTATCTTTG 81655 32 100.0 35 ................................ TATCAACACTGTAGTAGAGGGTATAAAAATGACAT 81588 32 100.0 35 ................................ CATCTTGAGAATAGATCTCAATAAGACCACGTTCG 81521 32 100.0 35 ................................ ACAGTACTACCAGAGAGCAGCCAACCCCCAGCAGC 81454 32 100.0 34 ................................ ATCATCGGTCAGTTCAAGCTCATGTTGCTCAAGA 81388 32 100.0 34 ................................ TCCTACTGCCGAGGCCGACTATTTCGTATCCCAG 81322 32 100.0 34 ................................ ATCTGCTTCGACGGCGGCCTGGGCTTGGAGCTGC 81256 32 100.0 33 ................................ CAGTGGCAGATGGGCATACGCGACGCCTCTTTC 81191 32 100.0 33 ................................ ACGTCGGGCAACGGCTTGACCTTCTATGGCGAC 81126 32 100.0 35 ................................ TCGGCAATCGTCTGATAGTCGGTGACGATCTCGCA 81059 32 100.0 34 ................................ TTGTTGGAGATGCCTTGGCATGGCGATGGCGTGC 80993 32 100.0 34 ................................ TTGATGAAGCAGCATATATGGGCGGAACGATTTT 80927 32 100.0 36 ................................ GTCGGGCGGTGGAGCCTGCAGGGCGCATGCCTGCCT 80859 32 100.0 35 ................................ ATTCAGAGCGGCAAGCACATATGGACTGCCGAGAC 80792 32 100.0 34 ................................ ACTATCACATCACCGGCATCAACAAGCTGTCTCC 80726 32 100.0 34 ................................ CGCATAATCCGGATACGAGCCTGATCAAGGACAC 80660 32 100.0 34 ................................ TCCGTGGCCGCGTCGCCGGCACCGTCCCACCAGG 80594 32 100.0 34 ................................ AAACCCTTCACCCCCAACTACGCGGTGGAGCCGA 80528 32 100.0 35 ................................ CAATCATCGGGTTTCGCGTCCATCGTCCTTCGGGG 80461 32 96.9 34 ....T........................... TATATGAACGGCAAGATCCGCCAGCTGCGTGCTT 80395 32 100.0 35 ................................ TTCAAGCTCCGGCTCTGGCATCAGACCTTCGAGAA 80328 32 100.0 34 ................................ TGGTTCACAACGGCACACTTATCATGCAAGGCCT 80262 32 100.0 35 ................................ GCGTGGACGGTGAAGCACTCGTCCCAGTGCGTGCC 80195 32 100.0 35 ................................ TCTCGCATGCCTTTGACCCCGGTGCATTTTGTGGA 80128 32 100.0 34 ................................ TTTTGTGGGAAAATGCTGTTATGCATTGGATGGG 80062 32 100.0 34 ................................ ACCATGGCACGGTTCGTGCGGCAGAAGACCTATG 79996 32 100.0 34 ................................ TGTGCTTATGCAGTATATGCGTTCATGCTATCTG 79930 32 100.0 33 ................................ CGACAGGCTGCCATACGCAACGTAACCTTTGTG 79865 32 100.0 33 ................................ CTGTTGACCCGGAGCGAGCACTACCGGTTCGAC 79800 32 100.0 33 ................................ GCCCTGGTAGGGCCAGTCGATGGGTAGCTGGCC 79735 32 100.0 34 ................................ TTCTCATTTATTCCCACCTCGGAAAGCTTTGTAA 79669 32 93.8 34 .......T.............A.......... TCCCGTCTTGTCGAGCATCCATCCGGCCATTCGG 79603 32 100.0 33 ................................ TCGGTCGCGCCCGGCTCCCAGGACGAGACAGCC 79538 32 100.0 34 ................................ ATGAAAGCCATCAGGGATGCCATTGTCAGCGGTC 79472 32 100.0 33 ................................ ATCTGTGGTGCCCCGAAAAGACGGCAGTATAGC 79407 32 96.9 33 ...........................C.... ATCTATGCTGCGATCCTTGAACCGGTCGGCCAA 79342 32 100.0 34 ................................ GCTGTCGAAACGCAGATGAAAGCCAACCCCGGAT 79276 32 100.0 35 ................................ CGCAGCTCATACCCGATGTACTTAATGTCAATTCC 79209 32 100.0 34 ................................ CACTACCACATTACCGGCATAAGCAAACTGTCCG 79143 32 96.9 33 .............T.................. TCCGCTGATACCGGGTCGCATGGGAGTGCTTAT 79078 32 96.9 35 .............T.................. TCATCCGGGTGGCCGACAAGATAATCGGTAAGGGT C [79072] 79010 32 100.0 34 ................................ GTCAGGGATGCGGGCTGTCTGGATGGCGCGGATG 78944 32 96.9 33 .....A.......................... ATGAACGCCATCATGTTCTCGGAGGCTCCTACG 78879 32 100.0 34 ................................ CTCAACTACAACTACAACGGCAATAGATTCAACG 78813 32 96.9 33 ...................T............ TCGCCCAGGCAGGCAATCAGGTCAGGGCAACGT 78748 32 93.8 35 ................TG.............. TCGGACGGCTGCATCCGGGTAGTCGTGGTTCGGGT 78681 32 100.0 34 ................................ TGCAAAGGCAGGCGGCTCTGGTCTCCAACACTCG 78615 32 90.6 0 ............GT..............G... | A [78588] ========== ====== ====== ====== ================================ ==================================== ================== 60 32 99.3 34 GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT # Left flank : CATTATTACGGGGTGAGGCGGCATATTCCTGTTGACCAAGTGATGATGTTATAGAATCGCTGGGTTATGGCTGCACTGTATTGTCTGTGCCACGAAATTAGACGATGGCTGAGTAGTTGGTGTAATTCTGTAAACAGTGCAGTATGCTGACTGTTGTTGCGAATCCTCAGAGGCGCGAAACGCTAGCAATCATGTATTCGTCTGATCCTTCGCGCTACGAATCGCTGCTTTTATATGATATTCAGTCTTAATTTCGCATGTTTTAGTGAGCTGAGTTCTTTTTTGAATTTCCAAGCAGATGTCTGTAGATGCGAAGAAAGCTAGAATTTTAGTGAAACATATGAACGGTTGTTTGATAAATAAATAATGATGTTGTCGATTTGAGGTATTATCTCAATTGTTCGGCTAGAGACAGAATTCGTGTACGTAGGTTCGGCTGTAGGAACTCACTAGCTATTAAAAACTGACCATATATTGGTCAAGGGATGTATCATTGAGCA # Right flank : GCCACTACGTATGGTTTTCTGCCTGCGGTATGTACCCCCCCCCCCGTAGAAGCTTGGATTGGAAAACCGATTATGTTACTCTGAATCAACCAGACAACACTGTCTTTTAGCGGGAACTTGCATTAAAACTGTTCTTTCTTCAGAACTCTGTTAAGAATTGTATTCCTTCTAAACATGAGTATGAGTTGCTGCTCAGGTATAGTGTCAATCCTTTTATGCCATTCTCTTGTCCCTAGCTGCAAGAGTGCTGTGCTCCCGGCATTCGCGAGAATGATCCCAAGCAGTGACCGGGTCTTTTCGTAGTATAGAAATACTACTGGCCCTCCCTGCAGATGCGGGGACAATCCTGCAGGGCATCGGATGGATGCACTCATGTTCGCAAAGATGAGAGGAGATGAATGGCTGTGGACGAGGATTTCATGAGAAAAATGGCAACCAAGGATAAGGCCTGTAGCACTTATGACCATATTCCCCAGAAGAGGATTGATGACTATACGTCA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.80,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [19-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //