Array 1 135994-134794 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABFCI010000001.1 Akkermansia sp. GGCC_0220 NODE_1_length_388454_cov_467.854644, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ================================== ================== 135993 31 100.0 34 ............................... TGGCGCGTTTCGGTCAGGTTGATCTGGTAGCGCA 135928 31 100.0 34 ............................... TTTTCCTTATCGTTTCTCACAAACCCTTCCGGCA 135863 31 100.0 33 ............................... TGAAGGTGTGCCGCAAGCGAAACAATACAATAA 135799 31 100.0 34 ............................... TTGAACTTCGCAAGGTCCGAGTTGGTGATACGGG 135734 31 100.0 34 ............................... ACGGCATCTGCCTGTTCCCCGTTTTGCCGGAGGA 135669 31 100.0 34 ............................... TCTCCATGGCGTTGCCAAGAACATTTTTCAGGAA 135604 31 100.0 34 ............................... TAATCATATCCCTACTACAACGGTAGGAATTAGA 135539 31 100.0 34 ............................... TGTACTCCAATTTCAGGGAGGATGTAGTTAACGT 135474 31 100.0 34 ............................... AATCGCTTTCCCGCCTTTGGCCTTGCTTGCTCGA 135409 31 100.0 34 ............................... TTGCAAATATAGATAAAGATTAACTATGAATAAG 135344 31 100.0 34 ............................... AAGGAGCTTTTGTTGGTCCTTGTGGAGGGCAAAT 135279 31 100.0 34 ............................... ATATCCAGGTGCCCGCGGATGCTCTCCGCCCCGG 135214 31 100.0 34 ............................... GAGAAAGTCACCCTTGCGGGTATTTGCTCCGGCT 135149 31 100.0 34 ............................... ACAGGCCCGGCGCTGGAACGGCTCATTGACTACC 135084 31 100.0 34 ............................... CACAGAGTGGATATTATAGATATAAAAGTATTAG 135019 31 100.0 33 ............................... TCTTGTTACCTAAGAGGCCCCTACTATGGCACA 134955 31 100.0 34 ............................... CGATAAAAAACAGATACTTTCCGTGTTACTGCAA 134890 31 96.8 34 ........T...................... CCGGGAGCCAAGACAAAGCGGCTTGTCCATGTCA 134825 31 83.9 0 ....T................A..A....TA | G [134807] ========== ====== ====== ====== =============================== ================================== ================== 19 31 99.0 34 GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Left flank : CTGGACGCTCCTGGACGATTCAGCGCCGGAGGACGTGACGATCGGCCGCGAGGTACTGGCCAGAGTGCCGGTGACATTGTGCCGGGTTGAGGAGCCGTGGCGACAACGATCTCCTTGGAGCGAGTGGACGGCCTGGTGCTGGCCTAGCAGGACGGTGAGAGCCGAGAGCTATGCGGCCAGGTTTGCGATGGTGACCACCGGTTCCCCTCGCATGGATGACCGGCCATCCAGCGAGCGGGCCAGAGTGATGCACCTGCTGGCCGACGCCAGGGAGCGGATGCTCCGGGAGGGAGTGGACAGGGAGGACGATGAGGCGGTGGATTGGGGTGAGCTTCTGGCCGCGTGTAAGGGTGAGGCAGAGTCTATGCAGACACCCTGCGCGGAGTAGGCAGACAGGCAAGTTATATCAGATACCTGTCATAGTTCTATCAGATGCCTTGGCGCGTTACAGTGCGTGGATTGAAACCGGATTGGATTCAGGCCGTCCCGTAGGGGAAGCT # Right flank : GTGCAGTTGTTTTTAATGATGTCTGCATGGTAAGGGAGGTGATTATTTTGATAAATGGTTTTAAATGGTTATTTATTTAATATTCTTTTAAGGAGGATTTTTATGTTGGGGAGGACGCCGGATGAACAACTTTCCGGATGGTTTATTATGGTTTCCGGACAGCCTGTCCGGAAAAGGGAAGCAGGCAAGCGGTGCATTTCCTGCGGCATGGGATTTTTTTCCGCGTTCACAGTTTGTGATGGATGAAGCCGGAGCAATCCAATATAAAGATAAGATGCATATAGACTGGTTGAATGATTTTTTGGAATGGACGCCTATTTTGCTGATGGTGCTGGTAGCGGTCGTTTTTCTGGTGGCGCTGAAATGGAGAAGCGGCAGGATGAAGAAGTTTCTGGAGGAGTGGAAACGTAAGATCGTCCGGCAGGCGGAAGCCGGGAATCCCTCCGCCCAGTTCCGTCTGGGGCGCATTTACCAGGAGGGGGACGGCGTGGAGAAGGACC # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.60,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 171881-169967 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABFCI010000001.1 Akkermansia sp. GGCC_0220 NODE_1_length_388454_cov_467.854644, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 171880 31 100.0 33 ............................... CTGATTTTCCTGCTCTTCCGTCTTGTCTAAACT 171816 31 100.0 33 ............................... CGCGGGCAATGTGCAGTTGACCGTAGCCACCGG 171752 31 100.0 34 ............................... CTGTGCTGGAATTCGTGTTCGACCGGACGCTAGC 171687 31 100.0 32 ............................... ATCCCATACCGTAATTCCGAACGCCCGGTAAA 171624 31 100.0 34 ............................... TCATCCTGTCCTGGTTCTACGTTCCCTTTCTGGC 171559 31 100.0 33 ............................... GCTTGACTGTACATGAGATTTTGGCACAATTCA 171495 31 100.0 34 ............................... AACCAACCCGTAACCTCATAGGCCGCCTCAGCGT 171430 31 100.0 35 ............................... CCAGGTTTTTCCGCAGGCTAGCGTCCGGTCGAACA 171364 31 100.0 34 ............................... CTCATACGGCCCGCTATAGGGTGGAAATGCTGGA 171299 31 100.0 34 ............................... AGGTTTGCAAGCCTGTTATCTGTCTTATCGCCAT 171234 31 100.0 34 ............................... CGTTAATTTTGAGACATTGTAGCAGGTGCCATAG 171169 31 100.0 34 ............................... AATCCCCGGCCAATGGCTTCGCTCAAAGCCTTCG 171104 31 100.0 34 ............................... AATTCCTGATTGAGGTGACCATCGAATCCATCCG 171039 31 100.0 34 ............................... ACCGAGGACTTACTGATTCTATCCCGCATAATTC 170974 31 100.0 34 ............................... AGAGTAAGTATCTTGCTGTTGACGTAACCGGAGG 170909 31 100.0 34 ............................... CAATACCTTGAATGCCAATGCTATCCATGGCCGT 170844 31 100.0 34 ............................... CCGTCCACTTGTCCATCATGGAAAGAAGCCAGGG 170779 31 100.0 34 ............................... CGCATAGGTGATGAAGGCAGGGGAGAAGTTACCT 170714 31 100.0 34 ............................... CGGGCTCGTAGCCTCTGTTGGCGATGGCTGGAAG 170649 31 100.0 34 ............................... GACCCCAGCAATGAAAAGCTGGACCCGGACTTCT 170584 31 100.0 32 ............................... ACCCGAGGGCACCCTGCTGGTCCTGGATGAGT 170521 31 100.0 35 ............................... CTGAATAGCTGGATAATTTTTGAAGGGATAGGCAA 170455 31 100.0 35 ............................... CTCCATGCTAGCGGCGTATATAAAATGACGCACAA 170389 31 100.0 34 ............................... ATAAGTTGTATGTGGCTAGCTGCTTCAGCGTCAT 170324 31 100.0 35 ............................... TATACGCCGGGTGATGGACCTATAGCTTTCAACCT 170258 31 100.0 34 ............................... GTAACCTACTTCATAGGGAGTAGGAATATGGGGT 170193 31 100.0 34 ............................... AGCGTCAATGTCCATGTCTTCATCATTGTCCCTC 170128 31 100.0 34 ............................... TGTTTGTGGAGACCCTTAGCGGCAAGACCAAAGG 170063 31 100.0 34 ............................... ATTGTATTATGTGGTTAGGTTTATTTATTGTGCC 169998 31 83.9 0 ....................A..GA...C.G | T [169978] ========== ====== ====== ====== =============================== =================================== ================== 30 31 99.5 34 GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Left flank : GCCCTGTAAGGGATATTCCGTCATTCATTCGTTAACGGGAGCCGTCCGCAAGGGCGGCTCCTTTTTAATGGCAGCGGAAACCGGAGGGGAATTCGGCTTCCGGCAATGGGGAAAACGGCGCGCCGCCCGGGAGGCCTGTTGTGTATGTGTCTCCATGTTGGCGGCTCCGGGGATGCACGGTTCTGTTTGAAGGAACGTGGAAGATGTTGCTGGACGCGGCAGAGGGGAACGGCTAGCATCAATGAACCAAGTTGAATGCAAGCCGGACCGGACGCGGCGAAGATGGAATATTACGGAATAACGCCGCGTCTGATGCCGCCTTGCGCCAACCCCAAGCTCACAGAAAATTCCCGGGAGACCGGCGCTTGCTGTAAGTGATTGGGAAATGGATATTGACAAAAGAATCACCTCTTATCGGGCCTGACCGTATCCGGCTTCCGCATCAGGTTGGCGCAAACCCCTTGCTGCGCCCTTGATGCTCAACCCGTATCCTCCAGGCC # Right flank : GATAGTTGATATAAGTTGATTTAGGGTTGAAATCCGTTGGAATCTTAGAAAACACGGGAGTTGGAGCGCTCCTGGCCAGACAGGAGATATCTTATAAAAGTCGAAGCCAAAATGCGGAGAAATGACAGGTATCTGATATAAGTGCACTGGCTATGCAGAGGGGCTGCACAAGGGGTGAAAGCATGAGAAAAAAGCACATGCAATCGCATTGCAGAAAAGGTGAAAGCTGATTGAAATAGCGACCATGTCTGAATCAAATACACCTCTTGTTATAACGCCGATCCCAGTGTACGGATCAGTCACTGTCATCTCGCCGCAGGACCAAGACAAAGAACACCCCCAGACCTATCATCTGCGAGAGTCGGCCATCGTGCTGATCTGGGCCACTCGTCAAGGGCATAAGGTAACAGCGTGGGTGCGTGACGTACTCGACAACGTGTGGATCATCGTCCATGAAGACGATTGACCCAAGAAACAAAAAGGCCGCCAGGTTGTCCCTG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.60,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 36575-35334 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABFCI010000019.1 Akkermansia sp. GGCC_0220 NODE_19_length_46832_cov_466.980012, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 36574 33 100.0 34 ................................. CCGTTTTGCCGGAGTTTTTTGTACTGGTCATGCG 36507 33 100.0 34 ................................. CATGCATTTGAGAAGCGACCAGGATTTACCCATA 36440 33 100.0 34 ................................. AGCGTCGCCCACGGAGTAGGTATTCCCCGCATGT 36373 33 100.0 34 ................................. TGGAAAAAACAGAAGACATGGCCGGCGCCATCAT 36306 33 100.0 34 ................................. TTCATAAACTTTTGTTTTTTGGATGTACAGCAGC 36239 33 100.0 34 ................................. CGGGTCAGGCACGCGGCGTCCTCTGGTGCGGGCG 36172 33 100.0 35 ................................. ACATTACGATTGACCCGGCAGGCCGCCCGACTCTG 36104 33 100.0 34 ................................. TGCGGGAATGAGCCGTTTCAACGTGTCCAGGTCA 36037 33 100.0 33 ................................. CGGCAATCCAGCCGTTAAACCGAAGAGCGCCCG 35971 33 100.0 33 ................................. CGATAAACTGCGCCAGTACCCGTCCCTGTCCCG 35905 33 100.0 36 ................................. GATAATTTCGGACACCTCATCAGCGGTTAAATCTTC 35836 33 100.0 34 ................................. CTCAATATCATGCCTTCCCAGTCCGTAAAGTCCG 35769 33 100.0 34 ................................. TAACCATATCCCTACTACAACGGTAGGAATTAGG 35702 33 100.0 35 ................................. GTAAACAGAGTAGGTGATAGCGTCCGTCACGTCCG 35634 33 100.0 34 ................................. TGCCCGCTATGCCCGTAGCGGTTCACTTCGTCCG 35567 33 100.0 35 ................................. CATTTCAGCCGGGGAAATGTCGATGATTGGAAGGA 35499 33 100.0 33 ................................. TGGATATAGGTTTCGTCGATGACATTGCAGGTC 35433 33 100.0 34 ................................. CGTGAGGATCGCCAGCTTTTCGGCGTCGTTTTTG 35366 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 19 33 100.0 34 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : CTTAGCCATGTATATTCTCATTACTTATGATGTAGCTACGGATGACAAGGCCGGACAGCGGCGGTTGCGTCAAGTTGCCCGCGCCTGTGAAAATATCGGTCAGAGAGTGCAGAATTCCGTGTTTGAATGTGAGCTGGCTCCGGCCCAATTGGTTGACATCAGGAACAAGCTGCTTAAGATTATTGATAACGAGAGCGACAGCCTGAGAATTTATCACATGGGGTCCAATTGGCATCATAAAATAGAGCAATTGGGCAAGGAGAAGAGTTTCGACATTTCCGGCCCTTTGATCATTTAAAAGCTGTCTGAGCACGGCCTTTGCGCCAACCCCAAGCTCACACCAATTTCCCGGGAGATCGGCGATTGGCGTAATACATTGGGAATGGAAGATTGACAGATGAATACTTAGAAGAGAAGGCTAGGTGATGATGGCCTTCTTCGGGAGGTTGGCGCAAAGTATCGTTTGCGCTGTTGAATAACAATGTATATGGTCAGGCGCA # Right flank : AGCCCCAGGGCATTAGTGGGAATCAACTTGGAATGTCGCCCTCCGCAAGGAGTGCGTAACTCTTCCTAAAAATGAAAAGCTCTCCAGGCTTGTTTGGTCTGGAGAGCTTTTTTTCGGGTTTCGTTGTTTATTTTTCAGCCGGGGGCTGCCGGTTCAGATCGAGTTCTGCGGGAGGGAGGGACTGGAGCAGGGTCAGAATGGGGTCCTGCGGTGCGGCGCCCGCTTCCCGCTGGCGTTTGAATTCCTCCTCTTCCTGCTGGAGGGCCGCCAGTTTGGTATCTTCCACCAGCGCCTTGAATTTGTCCGCCTGGGAGTATTCTCCATCCGTATCCCGGAAGACGCGGGCCAGCCAGCGGCGTTTTTCTTCCGTGCTGAGCAGGGGCTCTTTCATGGGCTGGGGAGGGTGTTTTTATCCAGCAGGTTTCCTGCAAGCTGTTCCCCATCCGCGGTGGGGCGGTAGACGTAAGGGCGGCTGTCCCCGAAGCGGTTGATGTATCCCT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 46778-45576 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABFCI010000019.1 Akkermansia sp. GGCC_0220 NODE_19_length_46832_cov_466.980012, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 46777 31 100.0 33 ............................... TAACAAGGTCATGCCCCTGTAGGAATGTCTCCT 46713 31 100.0 34 ............................... GTAAGAATCTCTAACTTGTTCACTCATAGCGCAA 46648 31 100.0 34 ............................... ATTCTTGGTGCGATGGACCTGTAGCTTTCAACCT 46583 31 100.0 34 ............................... GACAATACGCACTACATAATGCATACACGATGTG 46518 31 100.0 34 ............................... TACGTCCCGCCACATGCCAGCAAACACGCGCTTT 46453 31 100.0 33 ............................... GCCCTTGGACGTCCCCAGGGAAAAACTCTTGTA 46389 31 100.0 35 ............................... CCGGAAGGAAAGGGGACGAACAAATAAACCTAACC 46323 31 100.0 35 ............................... TCTTCCCGGAAAACCCGTAACCTCAACTCTATCAG 46257 31 100.0 35 ............................... ACGTTATTCATTGTTCGTCAAGTATTTGTAGGCCT 46191 31 100.0 33 ............................... TGTTTCTTCGTAAATCAAGATATGCAGTTTACT 46127 31 100.0 34 ............................... GTGTGCTCCCTGCTAAATTCTACCTTTGGATTGC 46062 31 100.0 34 ............................... TTGCTTGTTTCACCGTAGTATTCTTCATACGGCC 45997 31 100.0 34 ............................... CCGGTACTGTACAGGGGTGATAAAGGTCCACCTG 45932 31 100.0 34 ............................... TATATAAAGATATTCTTCCACAAAGTGGTTGTTA 45867 31 100.0 33 ............................... CGTTTTGTCCCACACAACTACCCCCCGCCAAGT 45803 31 96.8 34 ...................A........... CCGTCGTCGTCCAGTCCGTCGGCCCTAAGTGGGG 45738 31 100.0 34 ............................... TCACGCTCCCCGTGTATCTCCGCCCGCAGCAGGG 45673 31 100.0 34 ............................... AACGGATGCTGATCATTGCTCCCCCGCTGGCTCA 45608 31 83.9 0 ........C....G........G....C..G | C,G [45578,45582] ========== ====== ====== ====== =============================== =================================== ================== 19 31 99.0 34 GTCGCACCTTCACAGGTGCGTGAATTGAAAC # Left flank : TCACAGGTGCGTGAATTGAAACTCCGTGTAATATCCCACAAAAGAGAGACAAAG # Right flank : GGACACGTTTTGGAAGGTTGTCACACTTGCATGGAAATGTAGATGTGAACATCAAACACCAGCCTTACTAAATGGCATTTCATTAAGTATAGGTTGCTGAGGGAGAATGGACTTGGAGCCGACTTTCTTGGAGTAATAAAGAAAAATAATAGTGAAGCTTGCATCTTTAAAAAGGTAGTTTGTGATATAAATAAACCTTCTCTTCAAGAAGAATTTGTTGTTGAAGTATGGCAATAGAATGTTAGGTTTCCGTTGCATTTTGCATCAAGAGAGGGTTAGACGAAATGATTAGAAAGTGTTTGGAGTCGGAATTGGAAACAATTTATGAAATTATCAATGATTCAGCCGTGGTTTATAAAGACAGGATTCCTACCGACAGATGGAAGGAACCTTACATGCCCGTGGATGAATTAAAGGAGCAGATCAGAGATGGCGTGGTGTTCTATTGTTTTGAAGATAAGGGATGCCTTCTTGGCGTCATGGGGATTCAGGACCGGGAT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTCACAGGTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-4.00,-4.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 87586-90665 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABFCI010000011.1 Akkermansia sp. GGCC_0220 NODE_11_length_90689_cov_422.628550, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 87586 31 100.0 34 ............................... TTCATAAACTTTTGTTTTTTGGATGTACAGCAGC 87651 31 100.0 34 ............................... CGGGAACGGGCTTGACCTGCGGATGTTCGGAACC 87716 31 100.0 34 ............................... CGGGAAAAGCTCATCATAGTTGAACGGCTTAATG 87781 31 100.0 34 ............................... CCCGGCTTCCGTGATTTTCCACACCATGTCCCTG 87846 31 100.0 33 ............................... CATGTTGTTGATTTTTGTAATCGTTGCAAATTT 87910 31 100.0 34 ............................... GATGCAAGTCTTTATTTCTTCGGGCCGCACGTTA 87975 31 100.0 34 ............................... TCTCTTCCACAATTTCCACAGTTTTTATAATCGC 88040 31 100.0 34 ............................... TGGATAATCTCACGCATGATACTGCTATACTTTT 88105 31 100.0 33 ............................... TTCCAAATGATGCCAGCTTCCGTCCGGGTTCCG 88169 31 100.0 34 ............................... CGTTGACCTGTGCGCGGAGCCTCCCGAGGATGCA 88234 31 100.0 34 ............................... CGTAGTCCCGCATCAGGCGGAACATGGTGCTGGG 88299 31 100.0 34 ............................... TATTTCCGCTGGTATGCCTTTGCCAGTCTCATGA 88364 31 100.0 34 ............................... GCCTGCTCTGCGATGAAACCATAGTCGCCCTCAA 88429 31 100.0 34 ............................... GGTGAAAGAATGAGGGTTACAAGCTCTCCTTCTC 88494 31 100.0 34 ............................... TGTGCGAAGGAATTCGGAAGCACTTCCAAATAAT 88559 31 100.0 34 ............................... TCATTTTCAGCTCGACGGGAACCAATATAGGATT 88624 31 100.0 33 ............................... CGGGTAGGTGAAAAAGTCCCATGTCTTAGGTGC 88688 31 100.0 33 ............................... TGTTCTTCGTAATATTGTGCAAGTCCGCTACCC 88752 31 100.0 34 ............................... GTCGAACAGGGCAAGGTGCAAGTGTTCATCTACC 88817 31 100.0 34 ............................... TCCATGCTGAATTCTACCTTCGGATTGCTGGAAA 88882 31 100.0 34 ............................... CTTTGCTACTCCTGCGGGCAGGAACCCGGCAAGG 88947 31 100.0 33 ............................... TATTGGGTTATAGTCAATCATTTTCTTAGTCAA 89011 31 100.0 34 ............................... CGTTCGTGCTAACCATTGTAAAATCAATCAGTCT 89076 31 100.0 34 ............................... CGTCCGCTTCCACGTCGGCTAAATGAAAGGCGTA 89141 31 100.0 33 ............................... TGCAGCGATTGCCGCAGGGCGAGGTTGTTGGCC 89205 31 100.0 35 ............................... TTTCACGCGCTTCTTCCGGCTTAATATCATAGCAG 89271 31 100.0 34 ............................... TTCCTCCTGTTCCGTTTCTGCGGTTTCCGCCCCT 89336 31 100.0 34 ............................... AACGTCCTGCTCAATATCAGAAAGGCACCCCTTG 89401 31 100.0 35 ............................... AAATGACTAAATTAGTTTTTAACGCATCTGATTCT 89467 31 100.0 33 ............................... ACCTCACCATCGGAAATAATCGTGTCGGTCAGG 89531 31 100.0 33 ............................... CCTCCATCAGATCCTCCACCGTCGCGCTTCCGC 89595 31 100.0 34 ............................... CAGGACCCGGACGGCAGGGATTACCTGTCCACAC 89660 31 100.0 34 ............................... CCCCGCTTTAACCTTTTTACACAACCTGACAATG 89725 31 100.0 36 ............................... CAGAAAAAATCACTCCATCCAGGGAGACGGCGTCCC 89792 31 100.0 34 ............................... CCGGCGCCGCGAGCGGGAAAGGCGTCATTACGCC 89857 31 100.0 34 ............................... TACGAAATCCTTCGCAATAATCCGGTCCGCAGGA 89922 31 100.0 34 ............................... CGGACTGCGCAATAACAATCCTGTAGGTAGCGGA 89987 31 100.0 34 ............................... TCTGCGGAGAGCATCATGCGGCCATATCCGCCGC 90052 31 100.0 34 ............................... TTGGGAAAGCTGGAGAAGGGTTGGTGACGGTAAA 90117 31 100.0 34 ............................... AATAACCCATACCCACTGATTCAGATTAATGGAG 90182 31 100.0 33 ............................... ATCTACCTGGATTTCCGCGAGGTGGTGAAGGAA 90246 31 100.0 35 ............................... TTTTTCCCTCTTGACTTTCGTCCCTTCTTTTTGCG 90312 31 100.0 34 ............................... TTCCACGTCCACTTTTTGCGGCTTGCCGTGTCCC 90377 31 100.0 34 ............................... TGTTATCGGATAATCTGTTTTTAGATATTGGCGC 90442 31 100.0 33 ............................... CGAAAATGAAAGTCCCCTGGCTTATATGGCCTG 90506 31 100.0 34 ............................... CTGGTCTGGTAGCAAGGCAGGTTGGTTTGGAATT 90571 31 100.0 33 ............................... GATAAGCTTGTATTCCGCCAGGGTGATAGCCTG 90635 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ==================================== ================== 48 31 100.0 34 GTCGCACTCTCACGAGTGCGTGGATTGAAAC # Left flank : GCCGTGAAAATACCGTTGCTGGCCTGCCTGGCCTCCGCCGTCTCCCTGGCGCTGGTATGGCTGTTGAGCCTGAACAGGTGGACGCGCAAAAGCATTATGTAAACCGCGGATATTTTCCGCAGGACGCTTCGGGACCACGGCAGTCCCGGGGCGCCTTTTCTTTTGTGGAAAAGAGAATAAGGCGGTTTCCGGGGAGGGGCCTGCAAAATTCTGGACGGGAAAGAGGGAACAGGCTAGGATATTCCTGCATCGTGCACAGGCCCTGGTTGCCGGAGATGTGGGCTTTTTAACGCATGAAAAGCGCGTCTCCCGGTCTCCCTTCCGCCAACTCCAAGCTCACAGAAAATTCCCGGGACACCGGCGATTTACGTAATCCGTTGGGGTTCTAATCTTGACAACTATCATCTCTTTTTTACGGCCTGGAATATGTGTGCCTCCATGGGAGGTTGGCGCAAAACACCCGTTGCGCTGTTGATACTCAAGCCATAGGCGTCCAGGCC # Right flank : CGAAAATGAAAGTCCCCTGGCTTA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTCACGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.60,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [40.0-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 25-185 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABFCI010000028.1 Akkermansia sp. GGCC_0220 NODE_28_length_8210_cov_448.602943, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ================================== ================== 25 31 100.0 34 ............................... TTTTCATCACTTCCGCGTCGCCGGAATTGGTGAT 90 31 100.0 34 ............................... GGTTCCGGCGGCCCTATCCGTGAAAGCATCTTTA 155 31 90.3 0 .....................TA.......G | ========== ====== ====== ====== =============================== ================================== ================== 3 31 96.8 34 GTCGCACTCTCACGAGTGCGTGGATTGAAAC # Left flank : AAGTCCCCTGGCTTATATGGCCTGG # Right flank : GTCCACATGTCTGCGCGGGGCGCAAGCCGCTCATGCACTGCTTCTTGAAAGAGGAGCAGATCAAAGCTTTATTTTCCGCAACCGTATCGTTTGGTGTTTGGTCTGTTCCCCTGTTATTTTAAGAAAGGACGGTAAGAATCCGTAGTGGAACGGGATGACGGCTCTCTTCCGTTTACCTCTCAGATTGGCATGGTTTGCAGCCTTTTAATGTCCGTCCGCGGCGGGTTGCCGAACATGCGCTTGTATTCCCGGTTGAATTGGGTAGGGCTTTCGTACCCAACGCGGAAGGAGGCGTTTCCTGCGTCCATGTTTTCCACAAGCATCAGGCGGCGGGCCTCATTGAGGCGGATGCGTTTCTGGAATTGAAGCGGGCTGATGGCCGTGAGGGTACGGAAGTGCTGGTGGAAGCTGGACGGGCTCATGCCGGCGCGGCTTGCCAGTTCCCCGATGCTCAACGGCTGGTCGAAGTGCTTTTTTATCCAGTCAATGGCTTTTGCTAT # Questionable array : NO Score: 8.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.84, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTCACGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.60,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 3242-24 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABFCI010000018.1 Akkermansia sp. GGCC_0220 NODE_18_length_60074_cov_466.673187, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ======================================== ================== 3241 31 100.0 34 ............................... CCCCAGTCTGGTTTACGGTTGTCGATTCCAGCCG 3176 31 100.0 34 ............................... CGTGAAGGGCACGCACATACCCATGTTTGCGGAC 3111 31 100.0 34 ............................... TTTTTGGCAGGGGCCGCAACCGGGGCGGCTTCCG 3046 31 100.0 34 ............................... AAATTGAGCAGAAAATTTCACCAGCCACCCAATA 2981 31 100.0 33 ............................... CGGTGCAACGTCAGATTTTCCGAAAACTGAAAA 2917 31 100.0 35 ............................... CGCCGGTCCTGCTTCGCCAGGATGACCAGCTCCCG 2851 31 100.0 35 ............................... TGGCAATGTCTTTGTGCTGGCAACTTCCACATCCT 2785 31 100.0 33 ............................... CACGCACAGGGAGAGAAGCCGGGACCGTATGGA 2721 31 100.0 33 ............................... CGGTCATGAAGCCCCAGAGGCTCGTCGGAAGCA 2657 31 100.0 34 ............................... GGCGCAGACGGCGCGCAAAAAATCAATGCCTACG 2592 31 100.0 34 ............................... TACCTAAGTTGCTGACGGTGTAGAGCTTTCGCAG 2527 31 100.0 34 ............................... CGTTCATGCGATTATTTTCTTTACTTTTTTACCG 2462 31 100.0 40 ............................... CCTTTGTCCAGCATTTCCACCCTATAGCGGGCCGTATGAG 2391 31 100.0 34 ............................... CCTTTGTCACTTCCCGTCCGGCAAAAGCCGCGCT 2326 31 100.0 35 ............................... GTATAATCACCGTAATGCAAAGTAGTGCGACAAGT 2260 31 100.0 35 ............................... CGGCTCCCCCTGCTCTATACGTCCGCAACGTACTA 2194 31 100.0 34 ............................... CAGTGCCCGCAGTCGTCGGGACGCTCGTGGGTAT 2129 31 100.0 35 ............................... AAGGTAGCAGTTAGTCATCCGGCAACCCGGATTTA 2063 31 100.0 33 ............................... CTTCAATATGCGACGGAAGTCAACATTGGACTT 1999 31 100.0 34 ............................... TTCATCCACCGCTACTATCTGACGCCGGCGGAAT 1934 31 100.0 34 ............................... TGTGCAAAGAGAAGAGCACCATAGGCGGCACCCG 1869 31 100.0 34 ............................... CACACGTTACGAAGGAACTCGCCAACACCAGAGT 1804 31 100.0 34 ............................... TTGACAATGGCAGGAGTTCTGCTATTGTCACCCT 1739 31 100.0 34 ............................... CACGTTGAGCGTTTCAGAATAGCCCGGCTCACTC 1674 31 100.0 34 ............................... CGGGCGATAGCCTTGGCCCCCGTATTGATGAGGC 1609 31 100.0 34 ............................... GTCGCTGGTCAGATGCTGGTTGATGTAGGCCCTA 1544 31 100.0 34 ............................... TAAAGTCGATTGCCATAATCTTTTGTTTTGGTTA 1479 31 100.0 33 ............................... AAGCCGGGGAACTGCATGGCCCCGCCATTGTGG 1415 31 100.0 35 ............................... TCCCGTATAGATAGCTTGAACGACAATCGGAACAT 1349 31 100.0 33 ............................... TGATAATAAAAAGTATAAATCAGGTTATGACGC 1285 31 100.0 34 ............................... CAGGTCGGCGAATCCCAGCGGGCGGACCGCGTCA 1220 31 100.0 34 ............................... TCCGGCTACCGACTGGGACCGGCTGCCGGAAACT 1155 31 100.0 34 ............................... CCCGTCCAAACTGTACTGCGCTACTGGTCTAACT 1090 31 100.0 33 ............................... TTTTGCCAAGAGGCAATCCCTGACCATGCGGGA 1026 31 100.0 33 ............................... GCGTTCGCGGCTGTTGGTAGCCTGCCTGGACGT 962 31 100.0 34 ............................... TTTGCTTTTCGCCGTCGTCATCCAGTCCGTCAGC 897 31 100.0 34 ............................... GTGAGTGATCGCGTGTTTCGCTCGAATGATTCTA 832 31 100.0 33 ............................... TATTCGCTTTTGATTTTCATTTATGTATTTCCC 768 31 100.0 34 ............................... GCCCTGGTGGCATGAATAGCTTAAACACTATACA 703 31 100.0 34 ............................... CCTGCCCCCACAATCTGCATAACTTCCTCATGTT 638 31 100.0 34 ............................... GTTCTTCGCTCATAGCAAAAGTCTGATTTTTAAT 573 31 100.0 34 ............................... CGGATGAAGCGTTTGATGCAATCGGGGATGATGC 508 31 100.0 34 ............................... TATAATCATTAGCAATTAATCAAAAAAACAAAAG 443 31 100.0 33 ............................... TATGAGAAACGTTGAATTATGCGTGGTTGCATG 379 31 100.0 33 ............................... TGTTCGCACTAGCTGCGTGTGCCTCCTACATTA 315 31 100.0 34 ............................... CATGCAGTCCAGCACTCCCGGCAAGCCCTCTTCG 250 31 100.0 35 ............................... TATTCTTGGTGCGATGGACCTGTAGCTTTCAACCT 184 31 100.0 34 ............................... TCGCAGTATGCTATGACATTAGGCCTGAAAAACT 119 31 100.0 34 ............................... TCCGTGTAATATCCCACAAAAGAGAGACAAAGAT 54 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ======================================== ================== 50 31 100.0 34 GTCGCACCTTCACAGGTGCGTGAATTGAAAC # Left flank : CTCGGAGAAAACGATGCCTCCCTCAAGGACACGGTAACTATTCGCCACCGCGACTCCATGGAACAGGAACGCGTCGCCATCAAGGACTTGCTGCACTGGCTCATTGCCCGTGTGCGTTAACGGCGCCTTTGGCGGCTGCTGATGCCGCAAAACACTTCAAGGCCGCTCCATATTGAATGGAGCGGCTTTTTGTTTTCGGAATGGCAGAGAAGGAAAAAGTTGCTGGACGATAGGCCGCTGACCATCTAGCATTAAAAACAGGTTGGTGAACCAGATGGGAATCAGCAATTCCAAAATGAATGCTGAACCGCTGATCTGTTTGCGCCAACCCCAAGCTCACAGGAATTCCCCGGTAGATCGGCGATTCCTGTAAGTCCTTGAAATCAGCAGATTGACATTCCCTCCAATAAAATATAAGGCGTAAGGAATATGCATCCTGAAAGAGGTTGGCGCAAAAAGCGATTTGTACCACTAACTTTCAACGCATATCCCCTTCCGCC # Right flank : CTCCGTGTAATATCCCACAAAAGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTCACAGGTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-4.00,-4.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [23.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //