Array 1 401966-404821 **** Predicted by CRISPRDetect 2.4 *** >NZ_VVXK01000001.1 Alistipes shahii strain BIOML-A2 scaffold1_size535910, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 401966 36 100.0 30 .................................... CATCAACCAGGACGAGAACGGCATGCCCAC 402032 36 100.0 29 .................................... TTTAAAGAACGATAGAAAAATGCGCGGCC 402097 36 100.0 29 .................................... CCGAAAAGCGGTAAACAGGCCTTGACGAA 402162 36 100.0 29 .................................... GGAGGATCGGCGGCTGCCGCTGGCCCTCG 402227 36 100.0 30 .................................... ACGCCGGGCCAGCGCGCGCGCCAGTTCGGC 402293 36 100.0 30 .................................... CTCCAACCAATCACTATAACGGCTACCGCC 402359 36 100.0 29 .................................... AAGGTAGTCATTCGCAGAATAGAGGTCAA 402424 36 100.0 30 .................................... CCAAGCATATGAGAAAACACCCCACTGCGA 402490 36 100.0 29 .................................... GGTTTTTCTTATCAAAATAACGACGGTTG 402555 36 100.0 30 .................................... ATATAACCGACCTGGACAAGATCAATGGAA 402621 36 100.0 29 .................................... TAAGCAAGGAGAGTGTCAGCGTTCGCCCA 402686 36 97.2 29 ....................A............... AAGGTAATCATTCGCAGAATAAAGGTCGA 402751 36 100.0 30 .................................... CGCACGGGACCATCAGCCACTGGCGGGCGA 402817 36 100.0 29 .................................... GCGGACGATGACGCGTATGCAGGATTCAA 402882 36 100.0 30 .................................... ATAAGCAAGGAGAGTGTCAGCGTTGGCCCA 402948 36 100.0 29 .................................... AAGGTAATCATTCGCAGAAGAAGGGTCGA 403013 36 100.0 30 .................................... TACAACGGGCAAGCTCGCGCTCGAGGCGAA 403079 36 100.0 30 .................................... CCAAGCATATGAGAAAACACCCCACTGAGA 403145 36 100.0 30 .................................... TTGGAGATGGGACTATGCCATCTGTAGACT 403211 36 100.0 29 .................................... GCAGGGAACCATGAGCCACTGGCGGGCAA 403276 36 100.0 29 .................................... GCGATAACGACTCGCTTTTTACCGCGGTA 403341 36 100.0 29 .................................... CGCTGCTGTTTCTAGTAGCAACCGCACAT 403406 36 100.0 30 .................................... AAAACGAGGTTCGTTTCCCGTTTCTGGATT 403472 36 100.0 30 .................................... TGGGTCACGCAAGAAGTCTTTTGAGTTAGT 403538 36 100.0 29 .................................... CTTCAGTCAAGCAGGATTAGGCGTCAAAA 403603 36 100.0 29 .................................... TTTATAAATCGTCATAACGTCGCCGTTGC 403668 36 100.0 30 .................................... TAATCTTCGCGATCTTCAATCATCCAATCT 403734 36 100.0 29 .................................... TGCCTGCACCAGCAACACTGCCTGCGACA 403799 36 100.0 30 .................................... CTGGCCTAAGAAGCCGTTAATAAGGCCATT 403865 36 100.0 30 .................................... GAAGTCAGACGAGGAAACCTCGACGTCCGG 403931 36 100.0 30 .................................... TAATGATCTCTCCAAAACTGAAGAATATCC 403997 36 100.0 30 .................................... CGCAAGGGACCATCAGCCACTGGCGCGCGA 404063 36 100.0 30 .................................... TTTTAGATTTTTGTTATTATATTTGCGCTG 404129 36 100.0 29 .................................... TATCTAAAATGATTCGGAGAAGCCCGAAA 404194 36 100.0 30 .................................... TATATCGCCGAGATGTACTCGGAAATCGCT 404260 36 100.0 30 .................................... TAGTCCTTTTGATGCGAATACTTTGCTTGT 404326 36 100.0 29 .................................... CAAGCAGGAACAAACCCCGCTGCCACATT 404391 36 100.0 30 .................................... CACAACCTACAAACTAAATATCTCGTTCAA 404457 36 100.0 30 .................................... CATGTGCGCTAGTTCCCGGTAGGCCGCGAA 404523 36 100.0 29 .................................... CGTCTAAAACATCAAATCGATGTCTTTCA 404588 36 100.0 30 .................................... TTTCATTGCAAGATCTTTCTTCATCGAGAC 404654 36 100.0 30 .................................... AAGATAGGCAGATTAGCTTCCGTAGGAATA 404720 36 100.0 30 .................................... ACAACGGCGGCCGTTAAGACGGCGATTATC 404786 36 97.2 0 .......................A............ | ========== ====== ====== ====== ==================================== ============================== ================== 44 36 99.9 30 GTTGTGGTTTGATGTAGAATTTCGATAAGATACAAC # Left flank : TTTTGCACCCACGTTTTATTGAGGTTGAGCATTATTGTGTAGGCACTCTCATAGGCATCCGTAATATCTTCCATAAAATCCGGGTGAATGGGATTGCACCGATGAGAGCGTCGCGGGTCGTCGAAGTTGATCACATAGAACTTCGGCTTTACCTTGTAGCCGTCCGGGTGGTTCAGCAAATGGTTGTAGGCAATAGTAGATAGGTCGGGATACTTGAAATCGTAGATGTATTGACTAAAGCCCTTTTCAATCTGTTGCTTGATAAAATTGTTTACCACGGCATAGGACTTGCCGCTGCCCGGCGTACCCAACACGATGGACGCACGGAAGGGATTAACTACATTGATCCAACCGTTGTTCCAGCGTTTCCTGTAATAGAAACGTGTCGGCAGATTGACCGAATACTCGCTTTCGATAAGCCTCGTTTCCTGCATGAAACTCTCGTTCTCGTTGTTGAAAACATCCTCCATCAAATTGTGTTTCAACAGGCGGCTCATCCA # Right flank : CCGGCAGTATTGGAATGCTGCATAATTGCAGCTGTTGTTTACATTACCCTTTTGACTCAAGAAGATTTCAAACTCCCTTAAATACGTCAAATCCAATTCATCAAAACGCATATTGACCGAGCGGAATTGCGACATAAGGGCAAGTGTTACCTTGTGTTTGCTGGCGGAACCATACTTTTCGACCTTTTCCAAGCGTTCGATAATCTGTTTGAAGTACTCCCCGATCGTGCAGTTGATTCGTTTGCCGTTCTGTTCAAACAGCGTATCGAATGTAACGGGAATTTCCAGCACCTCCAACTTTTTGATTTTCTTCTCGTATTCACGTATTTTGGAGGTTATTTGAAACTGTATTTCTGCTCTATCAGGGCAGTCGGCGGTAGGTTGTTGCTTGTCGAAATCCCAATGCACCAAAGCTTCCGAAATGCCCAGACCGACGAACTTACGGCGGCGGTCATGGGTGAATACGAGGACAAGAGGGGCTAAATGGTTTCTGTTGATAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGGTTTGATGTAGAATTTCGATAAGATACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //