Array 1 866782-865853 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTLU01000003.1 Enterobacter sp. RC4 Contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 866781 28 100.0 32 ............................ TATTGCGGCCTCTAACGCGCTCTGAGAGACAT 866721 28 100.0 33 ............................ ACAGAGAGCGCCAAAGATGCGCCGATTACGCAA 866660 28 100.0 32 ............................ TGCAACGCAGCTTAGGCGTTCCTGGAAAATTC 866600 28 100.0 32 ............................ GAGCAGAAAGGGTTCACTCGCGAAGAGTACGA 866540 28 100.0 32 ............................ TCCTGGAGTTCGTCGTCAAAACTGGCCGCCTT 866480 28 100.0 32 ............................ TGCTATGCCGGACATGTATTGTTGGTGGTCCC 866420 28 100.0 32 ............................ AAGGACAAGCGCCGCGCAGCCGCTGAGAAGGC 866360 28 100.0 32 ............................ AGCCCGCGCAGCAGGTTCACTGATGCTTTCCA 866300 28 100.0 32 ............................ AGAACCTTCACCAGTGGAGCAACCTATTCTCA 866240 28 100.0 32 ............................ TCAACGGTAACACTGAGGTAACGAATTATGCA 866180 28 100.0 32 ............................ GATCAGCGCCAGCACGATAATAATCATGATGA 866120 28 100.0 32 ............................ TTTAGCCCCAGTAGTACGTGGTGAAGGTTATA 866060 28 96.4 32 A........................... CAGAACACAACCGGCTCATAGAAGCGTTTGCC 866000 28 100.0 32 ............................ AGATAAACTTGTCGGCGGGCACAGCACCGTCG 865940 28 100.0 32 ............................ GGGCAAAGACAGCTGCGCTAGCTCTGTGCGGA 865880 28 85.7 0 .........T..G..A.T.......... | ========== ====== ====== ====== ============================ ================================= ================== 16 28 98.9 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ACTCCCACAAACGCAGCCCGTATGCCGCTGTCTCGGAGCATATCTGGAGGAAGTGAAAACCGGCCTCACAGAATCAATGCGTGATTTTCAGGTAGTGGAATTTGAGGACGACGCGGAGCAACCGCGACAAAAAGAGTGGTTGCTGGAGGATACCGAAACGAAATGCGACTACTGCCGGGCGTTAAACCATGTGTTGCTGGTGTCGCATGTTGACCGCGATATGTTGCCGCACCTGACGGGGCTGCTCCATGACATTACGCATTCAATGGCGGCAGATGTCTTTGCACCTCAACCTTCAGAAAAGATAATGCACATTATTTCCTGAGTGCGATCTGAGGCATCGGGGAAGCTCCTCTGACGCCAATGGTTTAACCCTTTTTTTGATGTGCACGTAACTCATTGATTTATATGGTTTGGATTTACGTTTCTGAAAAAAGGGTTTTATGCGCAAAAGTTGATTATTTTCTTTTCTAACAATAAGATGGCGTTGTTTCCTCTCA # Right flank : AATGAACAACATCGACAAACAGGCGCTACACGGTTCACTGCCGCACAGGCAGTACAATTGAAACCAATCCTCTGAAAGATTCATCCCAGCTATTTTAAAGTTAATACTATCAACCCCACACTCTCTATTTTTTACAATAAATAAAAAATAATTCACGAACAAATTATATTCTGGTGAATATATTATTCGTAAAAATAATATTTCAAGGCAAAAAATTAATTCTTCGCTAAATTATCACTGCAATTACTATTCATTTGATACCCATCACATTTGTTTTCATCTTATCTACGATAACATGTCGTGTATTCAATGTATTGAAATAAAAGCCCTTGCCATGCCCGTCAACAGCATCACTCCAACAGACTTAAAAACTATTCTTCATTCTAAGCGCGCCAATATTTATTACCTGGAAAAATGTCGTATTCAGGTGAATGGTGGGCGCGTTGAATATGTCACTCAGGAAGGCAAAGAATCGTTTTACTGGAATATTCCCATCGCCA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1202118-1203106 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTLU01000003.1 Enterobacter sp. RC4 Contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1202118 28 100.0 32 ............................ ACACCTCTACAGCGCTGGAGTTCGGAAACATC 1202178 28 100.0 32 ............................ AGCGCCGAAGTGCCACATCTGCGGGTCTGTAA 1202238 28 100.0 32 ............................ CCATGCGCCGAAGCCTCAGGCTCAAGCAGAAT 1202298 28 100.0 32 ............................ AGTCTCCCAAGGTTTTAAACTTACGTTTGCCC 1202358 28 100.0 32 ............................ GTAAAGACCCAAGAAAAAAAGAAGGTAATCAT 1202418 28 100.0 32 ............................ TTTTGGTAAGTGCCAGAATCGCGAGAGGACGG 1202478 28 100.0 32 ............................ AAATTCGCAGGGATTTATTGTTGCCGCTTATA 1202538 28 100.0 32 ............................ TTTGGCGATAATTACGGATGGAGGTCGGGCGT 1202598 28 100.0 32 ............................ GCAGCCAGACACGCTGGTGATGGCCGACATTT 1202658 28 100.0 32 ............................ TATGCCAGTGCATTAATTTATGACTGGTATGC 1202718 28 100.0 32 ............................ GGGCCGCGACCTCAGAAAGCATGTCGTCCATC 1202778 28 100.0 32 ............................ TGAATGTCGGGATTGGTAGGCGACCTACTGCC 1202838 28 92.9 33 .......A.........T.......... GTCACAGTACGCCGTGACGTGCTCATTTGGCTT 1202899 28 100.0 32 ............................ GGAGGTAAAAACGCCAGACGAGCTGGCGAAAG 1202959 28 100.0 32 ............................ GGCTTCGTAGTCCGGCGTCTGGTGCAACTCAA 1203019 28 100.0 32 ............................ CACTCAAACCAACCGTCTGCAAAGCCGATTGC 1203079 28 92.9 0 ..............T.........A... | ========== ====== ====== ====== ============================ ================================= ================== 17 28 99.2 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TGAGAAGAGTCGAAGTGTGTGATAGCGGCTTTAGGGGCGGCGAGATAGGTATTCACGACAGGGTTCATGGTGTATCTCCACGGGGTAACCTGCATAACGGACGTTGCCCAGCGTCAGGCAACGACCTGCCCGGAACACAATTTATCTGTATATATATACAGTATTTTGAGTTCGTTCAGAAAGTATAATCAGATCGCCCGGCTTCGCCAGAGAAAATAGAAAGTTTTTAATTAGTTGATTTTTATATATTTATTTTTGTTTTGTCTATGTAATAGGTTGAGGTGGGGAACCCGGATTTCATCATAAAGAGCATTTGTGAAGAAATACGCAAGGGGGTATTGAAAGGTCTGTCCTGACGAAATGCATCAAAACCCTATTTAGGGAAGGTCTTGTAAGTTGTTGATTTATTAAGGATGAATTGAATGAGTTGAAAAAAGGGTTAAAGGCATCAGAATTGATTATTTTCTTTTACGACAATACGATAGCGATGTTTGCTTTCA # Right flank : AGAATTAACCGACAGTTCCGGGAGCAGAGACATTTTTACTGCCGTTCAGGAAGATTTATAGCAACCTGGCCGTCAACAATGCCGGGTGGCGCTGCGCTTACCCGGCCTACAATCGGCATTAATATCAAGGAATTGCATTATTTATCGTAGGGCAAAATGCAAGACGCGCACTGGATTACCAGGCTAATCCATGCATCATATGGCTCAATTCTATTGGGTGAAGTGAAAAAGCAATGACTGGCAAATAGATAAAACCCCACGTCAGGGCGCGGGGTTTGCTTAGTGATTACTGAGCGGCAAACAGACCCAGATGTTCTTTAGCGTAAGCTTCAAAATCGGTGCAGCCGCCAATGTGTTTCTGATCGAGGAAGATCTGCGGTACGGTTTCAACCGGTTTACCCACGGTTTTTTCCAGATCGGCTTTGGTGATGCCTTCTGCGTGGATATCCACATAGCGGAAGTTAAAGTCATCACGCTCTTCAGTCAGTTTTTCAGCCAGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //