Array 1 987123-985815 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVEN01000001.1 Enterocloster clostridioformis strain AM07-19 AM07-19.Scaf1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 987122 33 100.0 34 ................................. CTTGGGATTGAGTGAGTGGTTGGCATGGCTGCCG 987055 33 100.0 35 ................................. ATCTGAAGGGATAAAGAGGGATTTTAGCCCCTCTA 986987 33 100.0 35 ................................. CGCTTGTTATACTTGAGTGACAATTTGACCATTAA 986919 33 100.0 34 ................................. GACAAAACCGCCACGGCCATATGAAATATCAACA 986852 33 100.0 33 ................................. TTACTCTCTGTAACATAAAAACACCTCCTAAAA 986786 33 100.0 33 ................................. CGTAAGGGAACCATTCAATCGGTCGTTATCAGA 986720 33 100.0 34 ................................. TTCTATACAGAGTTTTAATCGCGCCTCCAATTCA 986653 33 100.0 34 ................................. ATCAAGAGAAAACAAACAGTATTCCGTGCTGGAA 986586 33 100.0 36 ................................. ATTCCACTGCCTGTCAGCCATGGACTTATACATATC 986517 33 100.0 34 ................................. CCTCTACCGGGATAGTGATAAGCTGCATAAAGCC 986450 33 100.0 34 ................................. AACCATGATAGACGGTAAGAATGTAGAACATACA 986383 33 100.0 34 ................................. AATTTTACATAATTGTTCATATAGACTCATACAG 986316 33 100.0 33 ................................. CACATTTTCAGATGCAAACCGATTTAAAGATTG 986250 33 100.0 33 ................................. TTTCTACGTCGTTAAAAAGGTGCGCATATGTTT 986184 33 100.0 34 ................................. GTTTTGTTCCCTCTGCTGTGCAAGCAGCTGCTGG 986117 33 100.0 34 ................................. AGGAGGAGTTTGGCCGGCTCTTGAATCTACTGGA 986050 33 100.0 36 ................................. CCTGGACATTGGGAATGTGTTTAAGGTCTGGAAGTA 985981 33 100.0 34 ................................. GACAGCTCCTCTCAGGCCCACCAGCGACATAGCC 985914 33 100.0 34 ................................. ATTATGATGAGACATTTGTTGTTGATATGTCGGA 985847 33 81.8 0 .............C...........A..TTCC. | ========== ====== ====== ====== ================================= ==================================== ================== 20 33 99.1 34 GTCTCCGTCCTCGTGGGCGGAGTGGGTTGAAAT # Left flank : TGCTGATACTGATTACATATGATGTGAATACGGAAACCGCTGCAGGCAGGACCAGGCTGAGAAAGGTTGCAAAGCAATGCGTTAATTACGGCACCCGCGTCCAGAATTCTGTATTTGAATGTATTTTGGATAATACCCAGCTGATAAAGCTAAAAGCCATACTGACAGATATCATTGATGAGCAGACGGACAGCCTTAGATTTTACAACCTGGGAAATAAACACACTACAAAGGTTGAACATGTTGGGGTGAGTAAAGGGATTAAAGTGGAAGAGCCGCTGATATTCTGATCTGGCTGCGGGTGGTAAGGAGGTTTCAAATAGTTTGGTGCGAACCAGAAGCAAACATGAATTTACGGGGGGATTCGCACCGGAAAAACTGCACAATGAGAACGGTTTTGGATGTGTGCAGGGTAGGTTGGCGGTGATTTGAGGGGGTATGATGTGATTTGATTGTGGAAATGTGATGAAGAATTGTTGGTTTTTTTGTGTAGTATTGCT # Right flank : TTCCGGTCAGTCTCCGCCCTCACAGCGAAGTAAGCTGAGAAGCCATCAAATTCAGGATTACGTTTAGTCAAAACATCATTCCCCTTTTTCTAAGAAAACAGTATAGTTTGAACCATAAACGTTAGCTATAACTAACAACACGCAGCAAAAAAGGTGGGCGAACACCCACCTTTGCCATAAACCTGTTATAGGGTATAAAGAATGCGGGCCTCCCTCACCCTTTCCATGCCCGAATCTCTCTAAGCCCCGGCACCAGCACCTTGGCGCTGGTTTCCAGAATGATCCGTCCTTTTTCAGCCGTGGCGCCTGACGGGTCTCCGCCGATTCCTATGGGTTTGCCGTCTGCTGTTTTCCAGTCCTCGGATACCCAGCCAATGGATACGTTTCCATAAGGCCTCAGTGCCTGATTGTCCTTAAATGCAGTCGGAATTCCTGCCTCTGAGGTATCTAACTTTACCAGAGACGGGTCCACAGCCATGACCATGGAGGTTTCCATCTCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCGTCCTCGTGGGCGGAGTGGGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTCCGTCCTCGCGGGCGGAGTGGGTTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.70,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 235766-236731 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVEN01000004.1 Enterocloster clostridioformis strain AM07-19 AM07-19.Scaf4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 235766 33 100.0 34 ................................. TTGTTTTGGTTGGAACTGTTGTGTATATAGCTTC 235833 33 100.0 33 ................................. CCATCCATCCGGGATATGGAATGGATTTATTAC 235899 33 100.0 33 ................................. TTACCGCCTTATCCTCTTCCGGCTCTCCCTCCG 235965 33 100.0 34 ................................. TAATGTATCCCCTATCATGGAGAAAAGCGAAAAA 236032 33 100.0 35 ................................. AAATGCAGTAAGGTTATTGTCAATATCCTCTATAC 236100 33 100.0 34 ................................. GGGTGTGAAATAGTCAATCGGCTTTTTGGTAACC 236167 33 100.0 35 ................................. TGATTTTGTTATACTGTTGACTGCCTGGACCATTG 236235 33 100.0 33 ................................. ATACTCTGCTGTGTGGGCAGCCATGACTGCACG 236301 33 100.0 33 ................................. GGATGTATCTCACATTTAAGGGAGGATAGTTAT 236367 33 100.0 34 ................................. GACTATCTGGCAATCCCAACAGTGGAAACGGACG 236434 33 100.0 33 ................................. TTCTTAAATTCCTTGGCCATCCCTTCCATAAAC 236500 33 100.0 34 ................................. TCATCTGAGATATCACAAATAGTTGTAGACCGGC 236567 33 100.0 33 ................................. AATTTACTATCCTCCTATACAGACACACGCACC 236633 33 97.0 33 .........A....................... TTATGACAACTTTGGAAGCCCATTGAACCACAC 236699 33 81.8 0 ......................CA..CCA...G | ========== ====== ====== ====== ================================= =================================== ================== 15 33 98.6 34 GTCGAGGCTCGCGAGAGCCTTGTGGATTGAAAT # Left flank : AAGTTCTGGAACTACCTGAAAAATGTGGATTTCTGGCAGTGGCCGGAACAGCGGTGGCCCTGAAGGCGGGAAAGCTGGCTGCTGTAATGGAACGCCAGGGCAGAGTACTGCGTATTTACAATGCAGAAGATATGAAGGAAGTGATGGCGGAATTTGTCCGTGCGTTCAAGCAGGGTGCCATATATCCGGAACAAAAGAGGCTTGTATTGAAAGAGTATCCGGCGGAGGCGGCAGAGGCTTTGCAGCATGCAGGATATATGCGGGAAATGAAGGATTATGTAATATATAAGTAGAGTTGGTTTCTGTGAGTTGGGAGCCCTTCAAACCAGGTGCGAATGCCAAGCTGACATGAAATGCCTGGGAGATTCGCACCTGAAAAACAGAGGAAAAGGCTGTGAAAGCGGGCTGGGTGAATGGACTGAATTGGTTGAACTGGGGAGAGAAGAGCATAATGCATAAAATGTTAGGGGGGATGTGGAGCAGGTTTGGATAATTTTGCT # Right flank : GATACCTGTAAGCCCCTAAATTGATGCAAAAGGAAAATTGCTCCCCACGTACCTAATGCATTGAAAGCAGCCATAATTATATATTGAGAATTCGCAAAACATCAGTTAAAAGAACATATTAACAGTATCCCGGTCAACAGGGAATCCGTTAAGCGCATACCACCCCCCCCCCAGCAAATAACATCCGCCCCAAAAAACACCAACATAAACAAAGGAGTAACACATATATGATTGAAATAATCTATAAAGACAAACGCTTTCTTGTTAAGGGCAGCTTTTCCATAGGAATAGCAGGAAACTATGTAAATGAGGATTTTGGGGACGAGAATATCATGATTAACGATACGTTAGAGGAAATCATGAAAGAATTGAAGGATGAGGACTCCTTTTGGTACAAGCCGCTGTTTCCCTATCTTAAATCTGAGACAGCAGACAGTGGCGGAATAGCCAGAGGTCTTACCGCGTACTACAATCAAAAGGAAAAAGAAATCAGGGAGAAT # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGGCTCGCGAGAGCCTTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGAGGCTCGCGAGAGCCTTGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.90,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //