Array 1 76211-75940 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFJM02000018.1 Leptospira weilii str. 2006001855 ctg1127715700033, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 76210 29 100.0 32 ............................. CCCATTAGATAAAATACCTCGGACGGAATTGC 76149 29 100.0 32 ............................. ACTCGTCGGTACTTTCAAGGCGATCCCTTCTT 76088 29 100.0 31 ............................. GCAAGAGGATTTATGGGATGATACGATTAGA 76028 29 100.0 31 ............................. ACATTGCCGCCCTGGGGATGGTTTATTTTAA 75968 29 93.1 0 ..........................T.A | ========== ====== ====== ====== ============================= ================================ ================== 5 29 98.6 32 CTTTTCCCCACATGCGTGGGGTTGAACCG # Left flank : GTTCAAAAACAATGCATTCTGCTCTATGCGCAGCCCTCATTTCTACTCAATGAATCTGACTTAGAAATTGCGATCGCCCTCACAAGTTTAAAATTTATAGATCGAAGGATAAACCTATTCTAAATTTTTTTATAATATTCAATTCATATAATTCCGATATACATAATATTATGGTAAATAATTCTTCCCTTTCTAAACAAATTTGTTCCCACCTCCTTCAAAATGATCGGTTCTTTTTCTTTGGATCCGAAATTCGTTTTCACGACGATTTGTTTCACGAGATAATAGATTTTGAAGGTTTATCTTTTATACCCAAGCTAAGTCCGAATCGAAACCAGAAAGAACCTTAAATGATTCCGTTCTTTCAAGGTTTCTTGAAGGGGACGGTTTTTCTTTTACAAACCTAATCGATTTTGTGAACAAAAACACAAGACCGATCATACCTTTAAAAATAAACTCTAAGCTGACATAGTATGTAAAATACTATACGAACTTTTAGT # Right flank : AAAATGACGAGAATAAAAACCTACCTTCGTTAGATTGAGAATTTTTACAACGTAGAAATGATGAATGTGGCTTTAAGTTTTTGATATTTCTGTTTTGGAAAAATTTCACTTTCTCAAAGTTGAAAGATAAACTTAGAAATTACGATCGGAATATAAAGAATATATCTTAAAAGTCCTTTGTTAATCCCGAAACGAAACAACACTTTTCGGAAGTCAAAAAGTTTGAAAAAGGGAACTGGTGAATCAAAGATAATGATGATTTACTAATTTATGGCGCATCGGAAATGATGAAATCGATATGCGAAATCTTATTGTCGTTTTAATTTTTATCGCAATTACCTCTTCCGGTTTATTGGCGAAAACTTCCGATTTCAAAGGCGAATGTAAACCAAAAGAATGGATCTGTATTCTTACCCGCAACGAAAATAACAAAGTAGAATTTTACGTCCAAAACCAAACACCTTCGGGAGAATATCCTTTTACAATCTATTTCAATTTCA # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-10.60,-10.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 32317-31617 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFJM02000022.1 Leptospira weilii str. 2006001855 ctg1127715700071, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 32316 29 100.0 32 ............................. AGCAGATTGCGATTCTTAGTACAGCAGGGTTC 32255 29 100.0 32 ............................. TATGAACGATTTTAAAGATTTATTAGTAAAAC 32194 29 100.0 32 ............................. TAAAATCTCTACTATCTGTAGCTTGAGCTTTA 32133 29 96.6 31 ............................T TAATCAAACAGATTATATAAAAGTTGTTAAA 32073 29 100.0 33 ............................. GGAAATACTTCTGGGATTTGAGCTTGGGACCAC 32011 29 96.6 32 T............................ AAATGATTGGAGTCTTTATGGGTTCAAACAAA 31950 29 100.0 33 ............................. AAGAGTTGTGATAGTTCTAGGATATGAATATGG 31888 29 100.0 32 ............................. GGACATTCCGCCAAATAAACAGATTAGATATT 31827 29 100.0 32 ............................. TTATGAGAGAGTGATTTTATTTTCTCAAATTT 31766 29 100.0 32 ............................. GAGTCTGAGTAGTCTATTTTCATACGGACTAA 31705 29 100.0 31 ............................. CAAAATGCTCACGTGTGAGCATTTTGAAAAC 31645 29 79.3 0 ............T.....A....A..ATT | ========== ====== ====== ====== ============================= ================================= ================== 12 29 97.7 32 CTTTTCCCCACACACGTGGGGTTGAACCG # Left flank : AGATATACAAGACTTTATAGAGACAGCCCATTAAATACAAACGTGATTTGCCATATTTCTCCGGAAGTGGCTTAATCATCAAAATAGAGTTGTTGAAAAATTCTATAGTTCCAATTGACAAAACCGCTTCAATCGGTCGTTTTTATAAAACAAAAACGGATGGAGTATTAATTTTTCAACAATTCTACTTATCTCCACATATTAGAGTGTCCAAAGTTCCGCGTCTAAAACGCGGGGTTTCTGCTCAAATGAACGGTACTTTATTTTATAGGGATCAGTAATATTTTTAGACAATCTGCTTAGAGGTTTTTCACACTTTCAATTGGTTTTAAAATAAGGCATCTTACTTTCACTCTTTTCAATTTCGTTTTTGGTTTATTGGGCTTGATTACGGTTACGTTTCACACGTTCTTAGTAAGAGGCGATTTGCCATCATAGATTGACTCGAACCCAAAAATAGATTGCAAAAAATCCGGATTTATCCTATACAAGCTTTTAGC # Right flank : TTCAGTCAAAACAAATAAGGACGAAACAGATGAGTAATAAGAATTCGGAAACGGAATCCAATTTAGAATTTTCAATGTAAAAAAACTAAAAACCAGTTTCAAAACCTGAAAATGTAGGAACTCCCACCAATTTTAAACAAGAGGGAAAACCGCACAAAAGCGGTGTAAACTCCAAGGACGTAATCTATGGGAACTCCCACATTTTTTTAAAAACTTGCCGGACACGAAAGATATTCTTTGAAGGTTTCGAGATGAACTCTAAGACAAACACAATACGGAATCAATTCAAAAAAAACCTTTTCTCAAGTTAATCCCGTATTCCAAATACGCTTTGAGACAACAACTCATGTTCATCCAACCTTGACAGTTCATATAAGAACCGTCTAACGCAGCTTGAGATACCTTCCAACCGGATTCGGTAATTTTCACAAGAGTATTGTTTTGATCCAAGGATTCGAAAATCATTTCCGTTTTGGTTTTGTACCCGCCAACAGTTAGAA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACACACGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTTTCCCCACACACGTGGGGTTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 61989-61230 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFJM02000022.1 Leptospira weilii str. 2006001855 ctg1127715700071, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 61988 29 96.6 31 ............................T GAACTTGAATCCGGAGTATGCAGTGACGGAT 61928 29 100.0 31 ............................. AAATGTTCCATTTGTTGGAACTGTTACCGGA 61868 29 100.0 33 ............................. AAATCATGGGCAAAGTTGATCATTTCATTTATT 61806 29 100.0 31 ............................. TTGTCTCTGTCGAAGGACCACTTAATGCAAC 61746 29 100.0 32 ............................. AAAAAATAAATTAGGATATTATATATGAAAAA 61685 29 100.0 32 ............................. AAAAGGAGAGGAGAGGGTAACAAATAAAGTAA 61624 29 100.0 32 ............................. CCTGTTTCAAAAAGTTATCTTTCGGAGAAGGA 61563 29 100.0 32 ............................. GAGGTGATACATGTTGGCAACCAAAGGAATTA 61502 29 100.0 32 ............................. GGAGGGTTGGCACATAGTAAACTTCGAGGCGC 61441 29 100.0 32 ............................. GGAAAAAAGAACTCCAACGTTTCGGATAAGGC 61380 29 100.0 32 ............................. AGAGAAATCTCTTTTACTCTGCTTCCCGTCTC 61319 29 100.0 32 ............................. GAAATATCAATAGATGTTGCAAATAAAACTTT 61258 29 86.2 0 .......................A..ATA | ========== ====== ====== ====== ============================= ================================= ================== 13 29 98.7 32 CTTTTCCCCACATGCGTGGGGTTGAACCG # Left flank : GTGGGGTTGAACCCATAACCAATCCCACAAATACTTGGATCCGAAAATAAATCTGTCGGAATTACGACAAAATCCCCCGTGAAACGATCGGCCCCACAACGCGCCCTTTAGAAAGCGTTGTGCCCGAGTTTCCCTTATTTTTGGGTGGGGGTGGAAAGACTCGGGAAATTTTTCTCTATCAAAAAATCATACTTCTTGCAAGTAAAAAGTATCATTCTTGTCGGAACACTTGAAAAATATCAGTTTTTGATCCTTATTATCCCAAAAGCCTTCTTAATTTCTGGGGTTGGTTATGATAGCGAGCGTTGTGCCTGAGTTTCATCTAGCTTCATGATCTTCAAACACAAAAGTTCCCGCACATAGAAGAACTCAATTACGAGTAAGTTCCCTTAGAAACATTACGTTCTTAATAAGAAGATTTGCCATCATAGATTGACTCGAACACAAAAATCAAAAATAGATTGCAAAAAATCCGAATTTATCCTATACAAGTTTTTAGC # Right flank : TTCAGTTTAAACAAAATAGATGGGCAATAGAATTGGAAAACAGAATCCGATTGAAAACTTTCAATGTAAAACTCATTCTCAGGAATCAACACGAAGAATAATATTTCACCGCGATCATTGAATGATAAAGTGCAATTTAAAACCAACCTACATTTGACTTCACTCTCTGTGCAATACCTTTAAACATTTTATGAGAATGAATTCTTCGGTTATCACATACTATGAGAATCGTAGAATCAATGAAAGATATTTCTTATACGAGAATTTACTAAAAAGGAAACTATAATCAGCAATATTTACAACATACGCTCGATAAAACGATTATAGTGTACCGCTTTTGTAAAGTTCAGTAATTACGGACAGTTGTAGGTAAAAATAACTTGCCAATTCGTTCCGTATGAGGAATTTCACGCATCATGTGTGATACGTTTGTCGCCACGCCGTCTTTTACCGGAACAGGTTCGATGATTTTTGGAAAAAATTCGAACAGGATGCTTGCG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 41816-42757 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFJM02000016.1 Leptospira weilii str. 2006001855 ctg1127715700084, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================= ======================== ================== 41816 45 82.2 24 C.........A.T....C.......A........AA.......G. AGCTACGAGAATTACATTCATACA 41885 45 77.8 24 ....C.......A.G.......G..A........AA..C.AC... ACCTACAAAAATTAGATCTAAACC 41954 45 84.4 24 ............A............A........AA..C.AC... ACCTACAAGAATTAGGTTTAATCG 42023 45 84.4 24 GT..........A............A...T....AA......... GTCTGCAAGTATTATATTTAAGCA 42092 45 82.2 24 ....C.......A...AC.......A...T....A..T....... GTCTGCAAGTATTATATTTAAGTA 42161 45 82.2 24 ....C.......A...AC.......A......A.AA......... AGTTACAAGAATTAGCTTTATACA 42230 45 75.6 24 ....C.......A...AC....T..A........AA..C.AC... ACCTACAAGTATTAGGTTTAAGCT 42299 45 82.2 24 ..........T.A..A.C.......A...T....AA......... GTCTGCAAAAACTATATTTAAGCA 42368 45 91.1 24 ..T..............T......................AC... ATCTGACAGAATTATATTTAAGCA 42437 45 93.3 24 .................T......................AC... ATCTGACAGAATTATATTTAAGCA 42506 45 77.8 23 ...........CA.G.TC....C..AA......A.A......... ACCTACAAGTATTAATTTTAAAC 42575 45 100.0 24 ............................................. ACCTACAAGTATTAACTTTAAACA 42644 45 100.0 24 ............................................. ACCTACGAGAATTAAATTTAAGCC 42713 44 80.0 0 G..........-....TC.......G.....T..AC.T....... | G [42727] ========== ====== ====== ====== ============================================= ======================== ================== 14 45 85.2 24 ACAATCAACTCACAACGATTCCAAATGAAATCGGGGAATTGAAAA # Left flank : ATATTCTCTTCTTTTGTTTTCGAAAACTCAAATTTTCGAACCTCCGAGTCAAGTCCTCGCTTAAACTTCCGATTTTTCCAAAGATCCTCGAGCGCCTAACCTTAACAAAAGAAAAAAGACGATGAAAACAATACGCAAAGAATGACAAAGCGGAAAAGATTTTTAAAATGACTTTAAAATGATGAAAACCGCGAGCTTACAAAAAATAAGAACTCTACTACTCGGACATATCAAAATGACACTCGAAAATAAGCGGTCGGTTTTACAAAAGCACAACAGTTCTCAAAAATTAAGTCAAATCGAAAATCCCCGACTTTTTAGAGGAAAATTTCAACATTCTAATTTTCGAAATAAATTTATCATAGTATTTCATTCATGCGTCCGAGTAGTAATCCTTCTTTGCTTTTTGAGCCAACTCAAAGCCGAAGAAAAACGAATCTATCATAATCTAACCGAGGCCCTTCAAAATCCAACGGATGTTCAAATATTATATTTAAACT # Right flank : AATCTACAAGAATTATATTTAGATGATATACCCGCTTGGAGGTCCCAAGAAGAAAAGATTCGGAAATTACTTCCCAAGGTAAATATTATCTTTATCGAAATAAAGGAGTAACGACGACACGACTATTATGCTAGGTTTTGAGACAAATTCTATATTTTTTAAAATTTAGAATATAATGAAAATCTTTCACATTCCGCCTCCGACCCAACCGAATTGAATCAGATAATAGAATACTATAAAGCGCGGAATTCTAAAAAGACAACCTTGAAAAAAAAGAAGATATCTCATCCTCATCGTTCCCGCCGCGAGTGAAACCCAAGAATAGGGAAGAGGAGTCAACGCCGCCAAAACGACCGCCCAAAATCCGTATCGATGCAGATAGTGTTCCAGCTTCTGTTCGTGCCTTTTTACAAAACTTGCAACACCTTCTATCTTAGGCAAAAGAATCCTTCCCGTCAGATACGAAACGGTCCCGCCGATCAGACTTCCGATCGAAGCGG # Questionable array : NO Score: 4.31 # Score Detail : 1:0, 2:0, 3:3, 4:0.26, 5:0, 6:0.25, 7:-0.44, 8:1, 9:0.24, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACAATCAACTCACAACGATTCCAAATGAAATCGGGGAATTGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.20,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [42-32] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : NA //