Array 1 118437-116937 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP049316.1 Caballeronia sp. SBC2 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 118436 32 100.0 35 ................................ ATATTGGCTTGATACGCGCTAACGCGATATCGATT 118369 32 100.0 33 ................................ AACGCCTTACCAACACGCCGCTGCTCAGCCGGC 118304 32 100.0 36 ................................ ACGCTTACGGAACAGCCCCGGCCGGCGCGCTGGCCA 118236 32 100.0 35 ................................ GTCGCACCGACTTCGCTGGGCTATGGCTTCCTTTC 118169 32 100.0 36 ................................ CCACGAACCGATCGTCGCCATACCGACAAATTCGTC 118101 32 100.0 33 ................................ CAATATGAAGCGGGCGTCGGCGTCGCACAATAC 118036 32 100.0 35 ................................ GACGGTGTTCCACGATACCGGCGCGCACACGTAAT 117969 32 100.0 34 ................................ GGCCTGCCAAAAAGGAGATAAGCATGTACCACTG 117903 32 100.0 34 ................................ GGTACGACACGCTCGACGGCGCATACGGCGACAT 117837 32 100.0 36 ................................ CGTCACCGTATTTACGCTAGGGATTTTCAATGGCAA 117769 32 100.0 34 ................................ TGCGACCATAGCGACGAAATCGTCACGTCCGATC 117703 32 100.0 34 ................................ TCAGCCGGCAGTACCTGCCACGGCGTTGGCAGGT 117637 32 100.0 36 ................................ GCGGCAGTGACGGACGACCCGCCGGAGGAAATAGCG 117569 32 100.0 35 ................................ CGCGTAGGCTGTATGAGACCTCGCATTTTTCCGGT 117502 32 100.0 33 ................................ ACATGCTCGAAAAAATGAAAGACCTGGTGGCGG 117437 32 100.0 35 ................................ CGGTGCTCGCGTGGCTCTGCAAGATGGTGCATTTG 117370 32 100.0 36 ................................ TTGGGAAACGCCAGCGAAATACGCTGCTATGCGGTC 117302 32 100.0 34 ................................ GGCGTATCGTTTACCTATTACCAGTTGCCGACTC 117236 32 100.0 35 ................................ AAAGAAAGACGAAAGCGTTATTCACTCGTCGCTAT 117169 32 100.0 36 ................................ TATCAGGAAGGCGTCTTGTGCGGCGGTTCGACCGCG 117101 32 100.0 34 ................................ TACTGCCGGCTGGACCGCACAAGCGCATCAAACA 117035 32 100.0 35 ................................ GGGATCCCGATCCGGGTCGGCAAGTATCCAGCCGG 116968 32 90.6 0 .....................C....C....A | ========== ====== ====== ====== ================================ ==================================== ================== 23 32 99.6 35 GTCGCGCTCTTCACGGGCGCGTGGATTGAAAC # Left flank : AGTGAGGTCGTCGCGATGATGGTACTGGTGAGCTACGACGTGGCGACATCCACGGAGGGCGGTACGCGTCGATTGCGACGGGTTGCACGAGCGTGCAAGGATTTTGGACAGCGTGTGCAGTATTCCGTGTTCGAAATAGAAGTTGATGCTGCTCAATGGACGCTTCTGAAGCGTCGATTATTGACCGTGATCGATCCCGAGGTGGATAGCTTGCGGTTTTACTTTCTGGGGAATAACTGGGAACGGCGGATTGAACATGTTGGCGCGAAAGAGGCGGTGGATTTCAATGCACCGTTGATTGTTTGAGGGCATCTGCGAACGTGTAGCGACCGGGGTTTTGCGGGGAGGTTCGCGGAAGTAGCTTTGCTTTGATTTTGTTGGTTTTTTTGGGGGCTGTATGCGGGATTTGGGGAGGGCGGATGATTTTTCCCGATCGCCGATGCAGGTTCGCGGAATGCGGCGATTTTATAGAAGGGAAACAAGAGGTTAGATGGGGTGGC # Right flank : CATGGCTGCCAAACGCGTGTTCGCGATGCTGGCAAAATCCCGCCCTTCACCGCCGCGCATTGAACCTCTTTGCGATCTTCAAAAGCAAACAAAACGAAACGATCTCAGTCCACACAGCATGTACCATCAAGGCTTCAATCGCTGCCCGTATCTTTCGCATAACTAATTTTTACAATTGCCCATGTCCAACCATCACGTACTAATCTGCCTGCCCACTTATAGCGAGGAAGTGCACATCAATTTTGCCTTCTCGCTGCTCGATCTGACACGCGCATTAACGAAATCCGGATCAAGCTACGAAACGTTGCATGTAGCGTCGTCCCACATCATTCGGGCGCGCAACTTCTTCGCCAATTATTTCCTGAGCCGCCCTGAATTCACACACTTGCTTTTCCTCGATACCGACATGAAGTTCCCCGCCGAAGCCGTCATTAAGCTTCTGGCCGCGAACAAAGCCGTAGCGGGCGTGGCGTATCCATTTAGACGTATTGATTTAAACG # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCTCTTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCTCTTCACGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.30,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 127865-126435 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP049316.1 Caballeronia sp. SBC2 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 127864 32 100.0 34 ................................ GAGATAATCATGGTGCGGCGTTCTAACGAGTATC 127798 32 100.0 35 ................................ CAGCCATCTTCGGATTGCCCGTCAGGATGCCGTAC 127731 32 100.0 34 ................................ GATCAGGTAAAGGACGGATTCTTGTGGGTCGAAC 127665 32 100.0 35 ................................ AAGCTTTTCGATCGTGATGCCAGCGGCCCCGCTCA 127598 32 100.0 33 ................................ GCACCTTGGCCGACGCCATCGTCGAGCTCACCA 127533 32 100.0 35 ................................ ACAAAAAGCTAGGTCGACACGTCGTGTACCTCTGC 127466 32 100.0 35 ................................ AAGTGCAGATGGCGTGGTTCGAACATCCGCTTAAC 127399 32 100.0 36 ................................ GCCGAGCAGCTCCGACCGGACGCGCTGATCGGCGAC 127331 32 100.0 33 ................................ TCTTCGATCACGCCCGCGTGCATGTTCAGCTTG 127266 32 100.0 35 ................................ TCGAAGTCATGGAACACGCTGCTGTACTCAAGGAT 127199 32 100.0 33 ................................ CAACAAGTGAAACCGAAACGACACTTGGCAAGT 127134 32 100.0 34 ................................ GCATGTACTGTCGGCAGAGTCGGGCATGATTGGT 127068 32 100.0 33 ................................ TACGGTTGTTATCAACGGTGTCACGTTGGTAGC 127003 32 100.0 33 ................................ ATCGAATTTCCAAATACTTGACGCTGTCACGCC 126938 32 100.0 34 ................................ TCCATCACCATGACAGGCGCGTATTGACCGGGGA 126872 32 100.0 37 ................................ GAGACCTATCTGATTACTGAGGACGGCACGGCGTATA 126803 32 100.0 37 ................................ GACACGACATACAGTCCAAACTCTTCGAGTTTGCGCG 126734 32 100.0 35 ................................ CCCGGAGACGTGACCGAATAAAGGTTTATGCTCAG 126667 32 100.0 35 ................................ TGAAGCCCGGTCAACGACCCGACGTAACGAGTCTG 126600 32 100.0 35 ................................ GGCTGGACGAACCCCGTGCTGGTGGACGGCGACAG 126533 32 100.0 35 ................................ ATAATCTCCAAAACCCGCTTTTCTAAAACAGCCTC 126466 32 78.1 0 .....A..TC.....T......T...CA.... | ========== ====== ====== ====== ================================ ===================================== ================== 22 32 99.0 35 GTCGCGCCCTTCACGGGCGCGTGGATTGAAAC # Left flank : AGCGGAATGCGGTGATTTTTTGTTAGGGCGCAAGGGGAGAAGTGGCGGCGCGGATGGGTGGGGGCGTTGGCCGGTTGGTTGGAACGGGATGTCGGGGTGGTTGCGCCGACGGGCTCGGGTGCGGGCAATTCATGTCGGTCAAATGAGAATCATTATTGTATACGGTCGGCGCGGCTTGGCTTTCGATTTGCTTAATCTTTACCTTTTGCATGTGAGCGGTCCGGATAGCGTCGGGTAATATCGCGTCGGCTCGTCGGGAGCGGCCGTTCGGTGATGGCGTTATCGGGCTGTCTCGGAAAATAAACTCGATGCGCGCGAACCGGAAGCGACCGGGGTTTTCCGGGGAGGTTCGCGGAAGTCTGGGTGGCTTGATTTTGTTGCGTTTTTCTTGGATTTTCTTCGAGGAGGTGAGCTGATGATCAAGGTTTCCAGATCACCGGAGCAGGTTCGCGAAAAGGAACGAATTTTCGAGGCAGATACAGTGGGTTAGATGGGACGGA # Right flank : CCCCACATCAAATTATTACCTTTCAAACCGAATTTTAAGATGCTGCCGATATTAAGCTCATCCGCATACGGGTCGGTTAACGGCATCGCGGCGACCTCAGCCGATTGATTCCAACGCATAAAGCGCCCGTCCTCCCCCCAAAAGGCAGCGCCTGTGACTCGAGTTTTCCACGCACATTCAACGCCCAATCCTGACGAAAGCGACTGGCAAACACTCCCGGATCACCTCAACGCCGTTGGTGAACTCGCGGGTCAATCGGCAAGACACTTCGGCGCGGCACGGCTTGCCGAAACCGCAGGCAAACTCCACGACCTCGGCAAGTACACAGACGCATACCAGCAGCGCATCCGTGGCGGCCCCCGCGTGGACCATGCAACATGGGGCGCGAAAATCGCTTGCAAGCAATACGGGGCACTTGGGCGACTCATGGCGTACGGCATTGCGGGCCATCACGCGGGACTGGCGAACGGCCGCGATCCGGGATCGCGCACCGCACTGGA # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCTCTTCACGGGCGCGTGGGTTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.70,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //