Array 1 8716-13425 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB908041.1 Vitreoscilla stercoraria DSM 513 H150DRAFT_scaffold00024.24, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 8716 28 100.0 32 ............................ TTTGGGACTTTAGTTTTTGGCAGCAACCTAAT 8776 28 100.0 32 ............................ GTTTGACGGTTGACTCATACCATAGCCGAATG 8836 28 100.0 32 ............................ AACACCGCAGGATTGAGGGGCGGATACGCTGC 8896 28 100.0 32 ............................ TCGCCACCAACACGCCCAAAATACCACCCACC 8956 28 100.0 32 ............................ TCAAATGTTAAACGCTCCTCTGCTAAAGTAAA 9016 28 100.0 32 ............................ GTAAGAATGTACCGATTGCTTTCTTAGTAACT 9076 28 100.0 32 ............................ ATGCGGAATTTGCATGAACGTTAGTTAGGTTA 9136 28 100.0 32 ............................ TGCGGTGTCTGCATCATGGTCTGACTTGGCAC 9196 28 100.0 32 ............................ TAACTTTACAACACTGACGGGCATGGCGGTTA 9256 28 100.0 32 ............................ GCAAAGGTTTGCATCATTATTGGGCGGACTGC 9316 28 100.0 32 ............................ GAAAGTAGCATCAGCATCAATGAATGCGTCAT 9376 28 100.0 33 ............................ ACTACCCCAGCGACACTGATACATGCCGCCCCC 9437 28 100.0 32 ............................ CAAGACAAGCAGGGTGAAACAGCCAAAGAACA 9497 28 100.0 32 ............................ AAAAAAAGCCCACACGTTAAGCATGGGTTTGT 9557 28 100.0 32 ............................ GCTATGTCCTGAGCTGAATCCGCATGTGTCTG 9617 28 100.0 32 ............................ GCCAATGCCCGCGCCTGAAATTGTGTCTTTCA 9677 28 100.0 32 ............................ AGCATAACCAAAATTCAAACTATCAACACCAA 9737 28 100.0 32 ............................ ATCGGTACGCCGTTGCGTATTTCTTTCAAAAC 9797 28 100.0 32 ............................ CAGCATAGAACGGAACATTCATATTCGTGTCA 9857 28 100.0 32 ............................ TCAACTACAACACAGAAAAAGGCTGCATCGAG 9917 28 100.0 32 ............................ CACTGGTTTTGAGCCGTGGTGATGACTAGCAT 9977 28 100.0 32 ............................ ACTTGCAAACTCTTTAGCAGCTTTTTTCATTT 10037 28 100.0 32 ............................ ACTTGCAAACTCTTTAGCAGCTTTTTTCATTT 10097 28 100.0 32 ............................ TCTACATATCCGCTATCAACTGTCGGAGGCAC 10157 28 100.0 32 ............................ TTGCTAGCACGACAATTCAGGATAAAGACAAG 10217 28 100.0 32 ............................ GTAACATTAGATGGCATCGGTGGTAAGGATGT 10277 28 100.0 32 ............................ CGTACCAATTACAGGAACAGAGTTATCTACAA 10337 28 100.0 32 ............................ ATTAGCTTGCTCATCAACATAAGCCATTGTAG 10397 28 100.0 33 ............................ TCGTGCTGCAATCAATTATTATGAAAACCCAAC 10458 28 100.0 32 ............................ TCACCCGTTCTTGGTGACCATATCATTGGTGC 10518 28 100.0 32 ............................ TGAAAGTTTCTCTGTGCTAACTGAATGTGTTT 10578 28 100.0 32 ............................ ATGATGCAGACACAGCAGGAGTCTCAGTACCA 10638 28 100.0 32 ............................ TACAATCCAAGTTTAAGCGTGTTTGATATTTA 10698 28 100.0 32 ............................ TTACCAAGTGAGTCAGGTTGATGCTCCTCGTG 10758 28 100.0 32 ............................ GTTTGACGTCCGAAATTATGCAACAGCGGCCA 10818 28 100.0 32 ............................ ACCCAAACATGGCAAAAAGCAGTCGATGCTGG 10878 28 100.0 32 ............................ AGCTATTGTTATTTTGCTCGGCTATATCATGA 10938 28 100.0 32 ............................ TCTTCAGGTGCGGTAAAGCTTGATTTATGTGC 10998 28 100.0 32 ............................ AATTTTCGTTTATTTGCAGCCGCTGCGGTCTT 11058 28 100.0 32 ............................ TTGATGTGACCATGCTTGTGTTTTTTTATTTA 11118 28 100.0 32 ............................ TGGGAACAGGCGGTATCTGAATTGCTTGATAA 11178 28 100.0 32 ............................ ATGCAGGCGGATTGAGTCATAATATTACCTCC 11238 28 100.0 32 ............................ GCCTTTTGGATTCCACCATACCTTGCCAATGC 11298 28 100.0 32 ............................ GCTAGACTTCTGAACCGTACGTTCTGTACGGT 11358 28 100.0 32 ............................ AATTAAGTAAGGCATTCAGACCTTCAATAGCT 11418 28 100.0 32 ............................ CATCTCAGCTTGCAATTGCTTAGCTTGTTCAG 11478 28 100.0 32 ............................ GCTTTAAATACTTCTGAGGGCGTTTTTTCTTT 11538 28 100.0 32 ............................ AATTCAGCTTGTAATTGCTTAGCTTGTTCAGT 11598 28 100.0 32 ............................ CTTGCCAAAGCATTAAACACGCTTAAAACGCT 11658 28 100.0 32 ............................ TAGATTAATTAAGGCGATCCAACATGGCACAC 11718 28 100.0 32 ............................ TACACGGCTGAGACTGTGCTAGCCGCTAAATG 11778 28 100.0 32 ............................ AACATGGCACACAGACTTGGTTACCGTAATAG 11838 28 100.0 32 ............................ TAAACGCAATGGGAGGGATTAACATCCGTGTT 11898 28 100.0 32 ............................ GCTCGGGTATCCTTTGATAAGCGCGTTAGTGA 11958 28 100.0 32 ............................ AAGCGAAGCGTCGTGCCCGTCAAGCAGGTATC 12018 28 100.0 32 ............................ AATCCAGTTGAATCATCCTGACGTAACGCAGG 12078 28 100.0 32 ............................ TTCCGAAGTATCTATGGGTGAAGACTTGAAAG 12138 28 100.0 32 ............................ AAGTGCTTGGCGCACATCTGCGTAAAAATCCA 12198 28 100.0 32 ............................ GTCCTTGTATTATATATTAAATGCCAAGTGCT 12258 28 100.0 32 ............................ TGTCAATTGTATATCCGTTTCCTTTGGGAAGC 12318 28 100.0 32 ............................ ATCCAACTCTTGCATAGTGGGTTTGCGCTTGG 12378 28 100.0 32 ............................ AACACGCTAGGAACACGCTGGGAACACGCAAC 12438 28 100.0 32 ............................ TGTTAAACAATCGAACTTGTGTATGGAAATCA 12498 28 100.0 32 ............................ AATGAAGTCGGGCATTCAGACCCTCAATAGCT 12558 28 100.0 32 ............................ ACGAATGCGTGTGATGTAATCGCGCATATAGC 12618 28 100.0 32 ............................ TGTAACATCCAAGTACGCCGCAACCATCAAAC 12678 28 100.0 32 ............................ ATATTAACGCTTTGCTAGTGCATAAGCAAGCA 12738 28 100.0 32 ............................ AAGCTAAGTTTGATACCTTAAACAGTATCAAC 12798 28 100.0 32 ............................ TACGCACAGTATCTATATGGTAACGTTGAAGT 12858 28 100.0 32 ............................ ACTGTGAATAAGCATAACGGGTTTTGGAACCC 12918 28 100.0 32 ............................ AACGCAAACCCAAGCGATAAGGCACGATAGCC 12978 28 100.0 32 ............................ TATACGTTGCTTCTATATCTATGTTATATCGC 13038 28 100.0 32 ............................ TCTAGTATTTTTCTCCACTTGACAATATTCTT 13098 28 100.0 32 ............................ TGAAAGTTTCTCTGTGCTAACTGAATGTGTTT 13158 28 100.0 32 ............................ ATATTAACGCTTTGCTAGTGCATTTGGAACCC 13218 28 100.0 32 ............................ AACGCAAACCCAAGCGATAAGGCACGATAGCC 13278 28 100.0 32 ............................ TATACGTTGCTTCTATATCTATGTTATATCGC 13338 28 100.0 32 ............................ TCTAGTATTTTTCTCCACTTGACAATATTCTT 13398 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 79 28 100.0 32 GTTCACGGCCATACAGGCCGCTTAGAAA # Left flank : TGTGCGTCAGTGGTTGGAGCGCTTGAGTGATTATGTGCACATAACGGCAATCAGACCTGTGCCCAAAGATGTGCACACTTATGCCATTTACAAACGCAAAACCATTAGAAGCAATCCCGAAAAATTGGCGCGCTATGATGCCAAAAAAGGACGACATTCTTATGATGATGCTTTAAAACATTATCAAAAATTTGTCATGCAAACGGATTTGCCTTACATTCAGATGCTCAGCCACAGTACCCAAGATGTTCAAAGTGGACAAAAACACAAATTTAAATTGTTCATTGAAAAACAACAGGCAACTGCGTCTGAAACGCAAAATTTCAGCACTTATGGTTTAAGTCACGAGTCAGCAGTTCCTGAATTTTAACCCAATATTTTTTAGCTCTTTAAAAATATATTAAAATCAAAAAGTTACAACAACGGTTAAAATTTGGGTATTAAGCAGATTTTAGGATATAAACCTTTGTTGTAACTTGTTTTTTTGTTTTTATTTTACT # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATATCGCGTTCACGGCCATACAGGCCGCTTAGAAATCTAGTATTTTTCTCCACTTGACAATATTCTTGTTCACGGCCATACAGGCCGCTTAGAAATGGTGTCAACGGCAATTTAAATTTGACCCCTTTGGGTATGAATTCGGCAATCTAAATTTGACCCCCATCTCTTAAATATCACCAATGCTTGGCAATACTCCTGCTTTCTTTTTGTTCTTCAATCGATAGCTTTCACCACTGATTTGAGCCACATGACAATGATGCAATAGGCGATCTAACATCGCTGCTGTCAGTGTCGCATCATCAGCAAATGTACCTGCCCATTGGCTGAATGGCAGATTGCTTGTTAACACGATGCTGCCATTTTCAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACGGCCATACAGGCCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACGGCCATACAGGCCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 29093-29780 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB908032.1 Vitreoscilla stercoraria DSM 513 H150DRAFT_scaffold00015.15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 29093 28 100.0 32 ............................ AGTCGATACAGGAGCAGCAGCTTCGAATTGGT 29153 28 100.0 32 ............................ AAATAGTCTCAACACCACCACCATTAGCTTGC 29213 28 100.0 32 ............................ ACTGCAATATCGTTGCCGCCATTCTCAGTGCC 29273 28 100.0 32 ............................ ATCAACCACGATTTGCAGGTTGCATTAGCAGA 29333 28 100.0 32 ............................ GCAAGAATGTGCCGATTGCGTTCTTAGTAACT 29393 28 100.0 32 ............................ ACTCTTTTTGATACGCTACATCTTGAAGCGCA 29453 28 100.0 32 ............................ TTGTGATTCTGACAATTGGAAAAAGTTAGACG 29513 28 100.0 32 ............................ GCAGTCAAGCGAGCGGAATATCAGGGCTTGAG 29573 28 100.0 32 ............................ ACTATCACAGGTAATGGCACTGAGACGCCAAA 29633 28 100.0 32 ............................ ATTGTCGGTTAATGAATGGCTCGAAGTGTTGA 29693 28 100.0 32 ............................ AAGTGCTGATGATGATTTTTATTATATCGGAA 29753 28 96.4 0 ...........................G | ========== ====== ====== ====== ============================ ================================ ================== 12 28 99.7 32 GTTCACGGCCATACAGGCCGCTTAGAAA # Left flank : GTGAGTTCTATAAAAACGCTATTGAATTGGACATGGGCAAAGAAGGCAAGTATTGGTCCAAAGACTTTGAAATGGCAGCGCGTGCGTTTTCAGCATATTTACAGGATCGTTTGGAAGAGCAAGGGCGCAAGAATGATTATTTGGCTTATTCAACCCAAGGTGGCAATGGTCGAGTCGGTGAGCGCGCTTATCCACAAGGTGAAGAGCGCCAACGCATCAATGACGCTTTCGATGGTTTGTTTAAAGTCATTCGGGAGAAGAAGGTATTGGAAACAGCTACTGCAAACAAAGCTTTGATGGATTCATTGTTTGATTGTGTCCATTAAAATTTTATAATAGGTGGCGTAGGTGGCGTCATATCAATTTTAACCCAATATTTATGCGCTCTTTAATAAATAATTAAAATCAATCACTTATGTTTGAAGCTTGAAATTTGGGTATTTAACAGGTTTTAGGCTTCAAACCATTGTGGTATCTTGTTTTTGTAGATTATGTTTACT # Right flank : GTGTCAAAATCTCACTTCATGTGGTATTGAGAAACAGTCGATGGAGATGAGTACAGATATGGGATGCTCATTCCTACGCATGATGCACCTACACCTACACGTTGCATCATGGGAGCGACTGCTTAGAAAATGGGGATTCTTGGTGAATATGAGAGTGCCATATGAAAACTCATACCTACGCAACATAAACCTCCTCTTCGCCAGCGTATGTTGGGAGCAAGAATCTATTGGGATTGTAGTAGCATAGAAAACAATGTCAATTGTAAAAGCATTATTATGCGAGAAGAGAATTTTGATACTAAATATATTTTTATAACAAAAAATAATATATCAAAAATAAAAAACTTATCTTTTGATATATGGGTTATACTGAAAAAGTTGGTTTAGTAATGAATTCACTTATCTCTGTCTTTCTATAGGTCTCCAAGATATTTTACTATCATAAATTTGTTAGTTTTCTATTGATTGTTTCTTTAAGTTATCAGGTTCAGTTTTTTATT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACGGCCATACAGGCCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACGGCCATACAGGCCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //