Array 1 13451-12822 **** Predicted by CRISPRDetect 2.4 *** >NZ_VAUE01000031.1 Providencia stuartii strain M147 NODE_31_length_64620_cov_28.1467, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 13450 28 100.0 32 ............................ AGCCCGAGCATTGCTATTCTCATTGGTGTAAT 13390 28 100.0 32 ............................ AGCAATTAAATCAATAAACGGAATGTGTATTT 13330 28 100.0 32 ............................ AAGATTCACAGTCATTATTAAAGTCCGGATGA 13270 28 100.0 32 ............................ TGATTTAGTGAAAGTGATACGTCGAGCACTTG 13210 28 100.0 33 ............................ TGTTCATGATGAATACGGAGTGCAACGAGGTAA 13149 28 100.0 32 ............................ CTCACTGACTGCCCACAGCATATTTTGATAGT 13089 28 100.0 32 ............................ AATAACGTCGAATGTACAGGGCGTGCAGTTTA 13029 28 100.0 32 ............................ AGACGGATTAAATTTAACACTAGACTATTATC 12969 28 100.0 32 ............................ GTTATAGAATGTCGTGAAACACTCACTAAACG 12909 28 96.4 32 .........................G.. CATGAACAAGTTTTCTCAATTGCCCGCTCTTC 12849 28 85.7 0 C......A.....T...T.......... | ========== ====== ====== ====== ============================ ================================= ================== 11 28 98.4 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATCAATTCAACTGGTGCCTGAATACGCTACGGCGGTTAGCTATGTACGCCAACATGTAAAGGGTGAAAAACGGATCCAGTTGGATATGCAAAAAAAGGCGCAACTATATGCAACTAAATCCGGTTTGTCGGTTGAGGCTTGCTTGGCACAGCTGAAGGAGAAACAGCCGAAAGCACAGAGCCGTTTGCCGTTTTTATGGGTTGAAAGTCAGCAAACTAAATCACGGAATGAAGCAAGTGGGCACCGTCCGTTTCCACTGTTTATTAAATGTCTTTCAGCCGAAAAGCCACAAGCAGGTTTGTTTAATTGCTATGGATTAAGTCAAGCAGTTACTGGCGATATAAAATTAGCAACGGTTCCACATTTTTGACCTTGTTTTTTTGCTATTTTAAAATTTGATATTAAAACAATGGGTTACAATAAGTAGAGAAAAAGAAGGTATTTTTGTAGAAATACGCTTAACGACTTGTTGTAACTTATTTTTTATTTGATAAAGTCTA # Right flank : ATCTGTGACCTACGGCTTAGAAGGCCGTTGTGCTATGTTTACTGACATATATGTAGTTAGATATAACTTGAGAGCGAAAGTGTTAGAGTTTAATTAATTTTCTGGAGTCCGATGGACTAAAAAAGTGATTGAAAGGATACTGTTGATTTAGATGTAAAGAAAAATAGAAAGACATTACAAATTTTAATTGTTTGAAAATTTGTAATTTTTAATGCATTCCTTTAACTTTTTACTATGTATTGTGGTAATCACATATGCCTAATTTTAATGTTTTTTATAAACTAAAAATACTCACTGCCATCTAGGTAGCTTAGAAAAGGTTATTTTATTGTTGATTAAGCACTTACTGCCATATAGGCAGCGTTTAAAACGTTATTTCTAATTAAAGTATTACAGATTTTCTGTGTTTTATCTCTATACATAATTTTTTGTGGATAATTGCCAGATTATTTTAGTGTTGTTTAAATGTGATTATATAAAGGAACAATTATATTGCTGAT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 23367-22439 **** Predicted by CRISPRDetect 2.4 *** >NZ_VAUE01000031.1 Providencia stuartii strain M147 NODE_31_length_64620_cov_28.1467, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 23366 28 100.0 32 ............................ GCATAACCGAATTTAGCCGAAGGTAACTATTT 23306 28 100.0 32 ............................ TTGCACTCTGGCGCCTGTACTGCCAGCACGAC 23246 28 100.0 32 ............................ TCACGGTGATGGTTGGTTTATCGGTGGCATTT 23186 28 100.0 32 ............................ TTATTATGATATTACCTATTAGCTTTTAGTAA 23126 28 100.0 32 ............................ CCAGAACAGACCCAACAGAACGACCACAAAAA 23066 28 100.0 32 ............................ ATTCACTAACGCTTGATGGCTGATATCGACCT 23006 28 100.0 32 ............................ AGTATTGCTCAATGAAGATGGCACACTGCATA 22946 28 100.0 32 ............................ TATCGAAGTTGTGCGCAAGCCAACAGAGTACG 22886 28 100.0 32 ............................ AATCACGAATTTACGGCCAGATAGCGGAGTTA 22826 28 100.0 32 ............................ GCTTTTGGGATTGAGGATACCAAACGTATCAG 22766 28 100.0 32 ............................ CATATGTCTAGTAGTCCTGAGTTAAAAAATAA 22706 28 100.0 32 ............................ AGAAATGAACGCGCCTTTTATCTGCACTTTAA 22646 28 100.0 32 ............................ GCTCACCGTTGCGCTTCGCGGCAGTTCGTTTA 22586 28 100.0 32 ............................ ACGAAAAAGAGAGTTCAGGCATTTGCCTGACT 22526 28 100.0 32 ............................ GTACGCTACGGCTTATTGAACTTTTTAGGGTT 22466 28 85.7 0 ..........A.............ATG. | ========== ====== ====== ====== ============================ ================================ ================== 16 28 99.1 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AAGCAGCATTGAAAAGTTTAGCTTTAACGGTAGGTTTAGAACTGTCTAGTAGTGCGGTACGTTCTAATTTAGTCTCTCCAGGTTCAACGGATACCGATATGCAACGTATGCTGTGGGTGAGCCATGATGCAGTTAAACAGCGGGTTTCAGGCGCCGCAGATCAATTTAAATTAGGGATCCCCTTAGGGAAAATTGCTAAACCAGATGAAATTGCCAGCACCATTTTGTTTTTAGCTTCAGATGATGCAAGTCATATCACCTTGCAAGATATTGTGGTCGATGGAGGCTCAACATTGGGGGTATAGCCCCCAGTGTTGTATATCGATACACGATTTTATAATGTCTCTATTCCATCTTAATCTTGATTGACCTTGTGTTTTTTGTTATCTATTGATTGCTAATAAAATCAATTGGTTATAATGATAAGAAAAAAAGAAGGTGTTTTACGAAAAAATACAGTAATGAATTGTTGTCTAAGACATTTTATCTGGTAAGTTATA # Right flank : TTGTTACCATCGAATGCTTATTTGTTTTATTAAAAAGCACATAGTAACCAATTGAAATTAGACAATCTGAATGCAATCAATGAGTTATTTTTATTCACCAACTCTGCGATCATCTTCCCAAAATTGCATAATAATGCATAACAGTAGGTCAATTGCTATAGACATTCCATAAGGTAAATTGTATTAACATAGTAATGTAACTTACCAATCTAATGGAAAGGCCAAATTTACATGGATGATTTTTCCCCTTCAGATCTAAAAACAATTCTGCATTCTAAACGTGCCAATATGTACTATCTAGAGCATTGTCGAGTGATGCAGAAAGATGGGCGCGTGCTCTATCTCACCGAAGCAAAAAATGAAAATCTTTATTTTAATATTCCAATCGCTAATACAACGGTTCTGATGCTAGGCACAGGAACATCGATAACACAAGCGGCGATGCGGATGTTATCTCAGGCAGGTGTGCTTGTTGGTTTTTGTGGTGGTGGGGGAACGCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 34260-33510 **** Predicted by CRISPRDetect 2.4 *** >NZ_VAUE01000031.1 Providencia stuartii strain M147 NODE_31_length_64620_cov_28.1467, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 34259 28 100.0 32 ............................ TCCATCTTTTTAGCTAACCACCGTGCCTGCTC 34199 28 100.0 32 ............................ TGCCGATATTCTCACACATTGGCAGGCTTTTT 34139 28 100.0 32 ............................ GTTCGTGTAGGGCCAAGCAAAGCTCACGCAAT 34079 28 100.0 32 ............................ AGTTAGGAAAAACGAACGTAGTTTACCGTGAT 34019 28 100.0 32 ............................ GTGTTATATCCAGCGGATCCGGTTCGTTTATT 33959 28 100.0 32 ............................ ATATGCTAGTTACACTGGAAGCGCTATTTCAT 33899 28 100.0 32 ............................ GCAAAAATTGCAGAAATAACAAAGCGGCTAAA 33839 28 100.0 32 ............................ GAGCCAACGAGGGCGGTAGTTCAATATCAATC 33779 28 100.0 32 ............................ ATAATGGACTATTTCATCTAGCCCAGCCCGCT 33719 28 100.0 32 ............................ AAAACATGCGACTGCCGCAGCACATATCTAGT 33659 28 100.0 33 ............................ CTAAGCCAATTGCACTTGATGACGCAGCACTGA 33598 28 96.4 32 .................T.......... TATGAAGGTTACGGGTACTCGTGTGCGCAACA 33538 28 89.3 0 .....................AC.T... | C [33512] ========== ====== ====== ====== ============================ ================================= ================== 13 28 98.9 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AGACCAAATTTCTAATATTGAGTCTAAGCAAGGTTTACAATTACAAGAAATTGATAAATTAGATTTTCTTGCAGATTCACGCAGTATCCAAAATAGCAAACGAGTCAGTGAATTGTTGGAAACAAATTGGACTGGTACGACATCAGATTATTATAAAGAGATGGCGATGTTCCAAGCTTCACAGGATATTTTTAAAGACTTAAATAGTATGTCGCTGTTTGGTGGTCGATAAGTGATTTGCCAGCACTGATTGTTTGATAGAGGTGCTGGCTTAATTCGTTAGGGATAATCTATTTTTCTTTATTGGTTCAATAGCAGTAGATATTGTCTTTTTTGATATTCATTTTGATTCGTTATCCTTCTTAAATTACCTTCTATTTTTCCATATTAAAAATAATAAGTTAAAACAATAGGTTAAGATACACCTTATAAAATAAGGTATTTTTAACAATTTCGGGCTAGTTTCTTGTTATCTTAGATGTTTTCTATGATAGGCTATA # Right flank : TCAGTCTTAATGACAAACCAAGGTAATGACTTGCGTACCTTGTTGTTGCCAATACAATATCCATCTTTCGCCTTTTATGTGTCCAGCGAGATCATTTGTTAGCTCAAGCGTCAGTGTATTATGGGTAATGTTAATGATTTGTGAGCTAAAAAAATCAATACCTTGTTTTGCATCATAACAGAGTGCCTTGTATAAACTCTCTTTGGCACTAAACGCGAGGGTGATAGCGAGAGGAAAAGGCCAGCCAATCAAGCTTTGCCTTTCTGCATTATTAAGTACGACTTGCCAAATTCGCTTTGCTTCAGACTCATCAATAATGGTTTCTATATCGATGCCGACGCTTGTTATGGCCTTATCAATCGTAGCAATCGCAATCGCACAACAATAATTATGACTAAGACTGCCTTTAATGCCTTTTGGCCACAAAGGCTCACCGTGTAAACCCATATCGATGACTTGGCCGCGACCCGTTAATGATTTAATAGCATAGGAAGCTGCGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //