Array 1 1288205-1285396 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009498.1 Endomicrobium proavitum strain Rsa215 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1288204 36 100.0 30 .................................... CGAGTAGGCTGCAGGGTTGTCAATAATATT 1288138 36 100.0 30 .................................... ACAAAAAAATACATTGTGTTACAATATGGT 1288072 36 100.0 30 .................................... ATAGGCAATTTGTTATACGTATTGAGTTAA 1288006 36 100.0 30 .................................... CTCCGTTGGGCGCTACAACGGGTTTGTCTG 1287940 36 100.0 30 .................................... CTACGCTCTTCCAGTTCTTTTTCGTGGCAA 1287874 36 100.0 30 .................................... TATTCGGCAACAGCCGCCTCAATGCGCCGT 1287808 36 100.0 30 .................................... TTCTCGTCGTCGCGGCTCGCCCAAGCGCAC 1287742 36 100.0 30 .................................... ATATGATGAATTACAGCGGGCTTTATCGTG 1287676 36 100.0 30 .................................... TGCTTGGCGCGTAACCTACAATCGCCAAAT 1287610 36 100.0 30 .................................... ACACCTCTTCCAAGCATGTTTGTTTCAGCT 1287544 36 100.0 30 .................................... TATTTCAACCAACGGACAAAACACTTGGCG 1287478 36 100.0 30 .................................... CTATCTGCTGTAGACATATTATAGCACAAT 1287412 36 100.0 30 .................................... GCAGGCGGAAGATATAAATACAACTTCTTT 1287346 36 100.0 30 .................................... TTAATGTAGAGCGTATCCGCCAAAATTTCA 1287280 36 100.0 30 .................................... ATATTCAGATTTGTCCAATCCCAATTCTTT 1287214 36 100.0 30 .................................... CCACCTCTTCAAAAATATATTTGCCGATTT 1287148 36 100.0 30 .................................... ACAAGAAAAATACATTGTGCTACAATATGG 1287082 36 100.0 30 .................................... ACAAAAAAAATACATTGTGCTACAATATGT 1287016 36 100.0 30 .................................... CTCAACCTCAACGTAATCATTGAATTGGGC 1286950 36 100.0 31 .................................... CGCATTATCTACAGATATATATTCATTGTCG 1286883 36 100.0 30 .................................... TAGTATGCCTGCTTTAACCGCTTCTTTTGT 1286817 36 100.0 30 .................................... AAGTAAGTTCACAATTTCGCCCATCTGTTT 1286751 36 100.0 30 .................................... ATATTCAGCTTTGTCCAATCCCAATTCTTT 1286685 36 100.0 30 .................................... TTTTTGCGGCGGTGTTTGGTGTTTGGTTGG 1286619 36 100.0 30 .................................... ACAAGACAAATACATTGTGCTACAATATGT 1286553 36 100.0 30 .................................... ATATTCAGGGTGATATTGCTCTCTCACCTT 1286487 36 100.0 30 .................................... TAATAAAGGTATTGACGTGATAAAAGATTT 1286421 36 100.0 30 .................................... GAAGGCATTGCTGATTACAGTGTAACAGGG 1286355 36 100.0 30 .................................... CACTTTGAGATAATCTTCCCATCGCCAACC 1286289 36 100.0 30 .................................... ATGCGCGGCAACGCCTAATTTATTAATTGA 1286223 36 100.0 30 .................................... CCCCCTATCATTTTATTAGTAGCTCTTAAA 1286157 36 100.0 30 .................................... TACGAAGCATTGAACTTTTAACCTGATACG 1286091 36 100.0 30 .................................... CGCCGTAGTTTGCGATGCTTCCTGTATCGG 1286025 36 100.0 30 .................................... TCCTCGCTAATTACATAATCCCTTAAAAGT 1285959 36 100.0 30 .................................... TTCGCCTAAGTGCGCTAATTTTGGGTTGTA 1285893 36 100.0 30 .................................... TGAATCATCCGGAAATTGCAAATGCGCTGG 1285827 36 97.2 30 .............................C...... TGTAGGAAGCTGTTTATTGAGTTCATATTT 1285761 36 100.0 30 .................................... ACGCGCTGTGCAAACGTATTCCGCTGCGTC 1285695 36 100.0 30 .................................... TGCGGCAGTGTTAAATTTTTCCCTTTCCCA 1285629 36 100.0 30 .................................... AATTGAGCGTTAAATAAATGCACCTTAATT 1285563 36 100.0 30 .................................... TTTTGCTTTTATTCTTTGTAGTTTTGCTTT 1285497 36 100.0 30 .................................... CCGGATGTTAAATGGGTTCAGAGCGCCGAT 1285431 36 97.2 0 ...................................T | ========== ====== ====== ====== ==================================== =============================== ================== 43 36 99.9 30 ATTATAACAAATCCATTTTTTTAGTCCCGTCAGAAC # Left flank : CAATGAAAAATAATAACAGCAGGTATCGCATGGGCTGGCTTATTGTTTTATTTGATTTGCCTACAGATACAAAGGCAGAAAGACATCAGGCAACCAAGTTTAGAAACGGACTTTTAGATTTGGGTTATCTAATGTTGCAGTATTCTGTTTATGCGAGATGTGCGGTAACATTAGACAAGAAGAAAGGGTTTTTAAACGACATAAAAAAAATCGCTCCTACCACAGGCAATGTTCAATGTTATTTTATTACCGATATCCAATGGGAAGAATGTATTACTATAACAAAAAATAAAGACAAAGGACTCCGGCAGCTTGAATTTGAAGATAAAATAAGCGACCAACTGCAGTTCTGGTAATAGTTTGATAAATTAAAAGCTGTCTTGCGTACCTTTAAGTAGAGGCAAGACAGTTTTAATTTTAGTTGAGGCGGGACTAAAAAAATGGACTTCCAAAAGTATACATAAAAACCAAAAAAATTACAAACTTTAAGAGTGAATCCT # Right flank : TTTAATACATATTAGCAAATTCTAAAAAGTTAAATCAGTGTAAAGAATGGATGGAGTTTTTTATATCGTGTTTGTTTAATTTAGTATCTTGACAAAGCATACTAACGCATGCTAATATGCCGCTAAAATTTACACAATATATAAAGAACGATTTGTTATTGCAAAAGAGAGGGGAACAAATTGCCCCTCTCTTTTGTTTTAGCTATAATACACTATACATCAACAATTCCGGAGAAAAAGTTTATGAAATTTTCAGATGCGCAGGATTTACTTAATAAGTATGTTAAAGGCGAAACGCTTTTGCGGCATAGTTTAACGGTTGCGGTGGTAATGGAATATTTTGCGAAAGAATTCGGCGAAATAAATCCTGAGTTTTACAAAAGCGTCGGGTATTTACACGATATTGATTTTGAACTTTACCCAAACGAGCATTGTATAAAAGCTAAAGAAATTCTTGAAACGGAAAAAGCAAATTTTCCGCAGCTTACCGACGAAATAAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTATAACAAATCCATTTTTTTAGTCCCGTCAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 2 1298677-1292995 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009498.1 Endomicrobium proavitum strain Rsa215 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 1298676 32 100.0 34 ................................ GGGTGGGCGGTTGGAAGTAATAGCGAGCACGGCG 1298610 32 100.0 35 ................................ AAAAGCGTGAAAGGAGCGAAAGGAAGTGAGGCTTG 1298543 32 100.0 35 ................................ ATTACTCCTTATCTTTTCATTATAAAATTTAAAAG 1298476 32 100.0 35 ................................ CTTTTATACGGGCTTTTAAGGGACTATGTAATTAG 1298409 32 100.0 34 ................................ CGTTGGGCAGCTACGCATCGTCGCTTGGGACAAC 1298343 32 100.0 34 ................................ ATAACTGCCGGTATAGCATTGCGGGCGTTATTTA 1298277 32 100.0 35 ................................ TGAATTAATGAAAAAGAAAGAATATCCGCAGCCCA 1298210 32 100.0 35 ................................ TTCAAGAGTGCCATATTTTTTATACATAAAACTTT 1298143 32 100.0 34 ................................ CGGCAATTAATGCTGATAATACATTAAATGTTAA 1298077 32 100.0 35 ................................ GCGTTGATATTTGCGGGGTTAAGCACGTTATACCC 1298010 32 100.0 35 ................................ ACGCTCATTGCTTTAAGCGGCAATTCAATCATTTT 1297943 32 100.0 34 ................................ ACGCTCATTGCTTTAAGCGGCAATTCAATCATTT 1297877 32 100.0 36 ................................ ATTTTATTATTGCGTTCCGAGGCTGTTGAGGCGGAC 1297809 32 100.0 35 ................................ AACAATAATGTTTCGCCCGCTCTCACGGCGTCGTT 1297742 32 100.0 35 ................................ ATCTAATGTCTGCTGATATTGCTCCTGCTGCGCAA 1297675 32 100.0 33 ................................ TTGTCAGAACGTGGAAAAATAGAAGCCGTGATA 1297610 32 100.0 36 ................................ TTAGGGTCATTGTATGTTTTCCCGTCGTAAACTTTG 1297542 32 100.0 33 ................................ AGCTGGTCTTATTTTATTGATTAAGGATTAAAA 1297477 32 100.0 34 ................................ TGAATGTTTAAGTAAGGTAAAAGGTTAAAATTAA 1297411 32 100.0 35 ................................ ATACAATGTATGGCTTAAAGCAAAAGAAAAATCAA 1297344 32 100.0 35 ................................ ATTTAAAGTTATCAGGAGTGCGCAGTTGTTATCAA 1297277 32 100.0 35 ................................ ATGGCGGAGTAGATGCTGATATCGCTAATATTCTC 1297210 32 100.0 33 ................................ ATCTATTCAGTGAAGCTGAAATAAAATCCGCTG 1297145 32 100.0 34 ................................ GCCCATATTTTTCCGCAAACGCATCCGTTACCTT 1297079 32 100.0 35 ................................ AATATATATTTTAGAGCATGCCGAGGGGCTCAAAG 1297012 32 100.0 34 ................................ TCTGCGCTAACGCTTGAGCAAGTCCGCCGGTGGC 1296946 32 100.0 34 ................................ CCTGTATCAGGTGATCTACGCTCAATCCCTTATT 1296880 32 100.0 34 ................................ CGACGACAACAAGATTTTAGAGCGGTATGATTAA 1296814 32 100.0 34 ................................ CGTCTGTAAGCATTTCCGCGGACTATCCGTTTTG 1296748 32 100.0 35 ................................ AAAATACCAATCGCTTTTATTAATTTTGTAAGGTA 1296681 32 100.0 34 ................................ AAAAAGGCGGCGGGCGGTGCTAAAAGAAAGGGAA 1296615 32 100.0 34 ................................ ACCAGAATTTACTCGCGCTAAAACATTATCACCT 1296549 32 100.0 34 ................................ GTATTTTTTACCATTATATTTTACTCTGTTCTTA 1296483 32 100.0 37 ................................ GCAACCTTCCCCGCATCATTTCACGGTCGCTTTGGCG 1296414 32 100.0 34 ................................ CAATCCACGAAACATTATCTTTTGCCCTGTTGGT 1296348 32 100.0 36 ................................ AAAACGTATTTCCAAGTCGTCAGCAATTATTTGCTT 1296280 32 100.0 34 ................................ AACTCACAACGTAAACATAAACCATCAATATGAT 1296214 32 100.0 35 ................................ TCCTCTATCTTTATTTTTATGCTATTTCTCGTCCG 1296147 32 100.0 34 ................................ TCGTTTTTATTCCCGGGTTATCGTCGGTGCCGTT 1296081 32 100.0 34 ................................ TATTTGTTGCCGCTCCTGAAAGTAGTTGATAATT 1296015 32 100.0 34 ................................ GGTCAAGAGAAGTTATGAGGATTATGAGTTACCG 1295949 32 100.0 35 ................................ AAATTGACTTGCAGCTAATTGATTTATTTGAAATC 1295882 32 100.0 34 ................................ GCCTTAGCGCCGCCTCCGTCAAAAAAACCGGCTT 1295816 32 100.0 34 ................................ TTATAAAAATATTTTAAAAACTACGAGGAGCAAG 1295750 32 100.0 34 ................................ GCCAATTCCATAATTTCATTTTTCTCTGCGAGAG 1295684 32 100.0 34 ................................ CGCGCATATGCGAGAGTCTATAATGAAAATTACC 1295618 32 100.0 35 ................................ TGGGAAACCTATTAAGTGGACTCATATCGGGGGCA 1295551 32 100.0 35 ................................ AAATTGACTTGCAGCTAATTGATTTATTTGAAATC 1295484 32 100.0 34 ................................ GCCTTAGCGCCGCCTCCGTCAAAAAAACCGGCTT 1295418 32 100.0 34 ................................ TTATAAAAATATTTTAAAAACTACGAGGAGCAAG 1295352 32 100.0 34 ................................ GCCAATTCCATAATTTCATTTTTCTCTGCGAGAG 1295286 32 100.0 34 ................................ CGCGCATATGCGAGAGTCTATAATGAAAATTACC 1295220 32 100.0 35 ................................ TGGGAAACCTATTAAGTGGACTCATATCGGGGGCA 1295153 32 100.0 35 ................................ AAATTGACTTGCAGCTAATTGATTTATTTGAAATC 1295086 32 100.0 34 ................................ GCCTTAGCGCCGCCTCCGTCAAAAAAACCGGCTT 1295020 32 100.0 34 ................................ TTATAAAAATATTTTAAAAACTACGAGGAGCAAG 1294954 32 100.0 34 ................................ GCCAATTCCATAATTTCATTTTTCTCTGCGAGAG 1294888 32 100.0 34 ................................ CGCGCATATGCGAGAGTCTATAATGAAAATTACC 1294822 32 100.0 35 ................................ TGGGAAACCTATTAAGTGGACTCATATCGGGGGCA 1294755 32 100.0 35 ................................ AAATTGACTTGCAGCTAATTGATTTATTTGAAATC 1294688 32 100.0 34 ................................ GCCTTAGCGCCGCCTCCGTCAAAAAAACCGGCTT 1294622 32 100.0 34 ................................ TTATAAAAATATTTTAAAAACTACGAGGAGCAAG 1294556 32 100.0 34 ................................ GCCAATTCCATAATTTCATTTTTCTCTGCGAGAG 1294490 32 100.0 35 ................................ TGAAAAGGTTATCGCAGGGCTTGCCGGCAAGATTC 1294423 32 100.0 36 ................................ GGGCGATGTTGCATATCCCATTGTGCCTGTGCTGTC 1294355 32 100.0 34 ................................ TTGATTGGGTTGACCAGAGCGGTAAACCATATTT 1294289 32 100.0 34 ................................ GCAACAATTAGCTGCGGTATAACATTTACGAATT 1294223 32 100.0 34 ................................ TGAAATTTTTGTTTTGCTTGAAATTTTTTTGATG 1294157 32 100.0 35 ................................ GAGCATACGCAAGAGTCTACAACGAAAACTATAGA 1294090 32 100.0 34 ................................ AAATCATTCGCAACGCGTCGCACGCGGGCTCTTA 1294024 32 100.0 35 ................................ GTGGCTAATCAACTCATCCTCACTTTTCTGTAATT 1293957 32 100.0 34 ................................ GCCTTTACATCTCCGGCGAGATATTTTTTAGTCC 1293891 32 100.0 36 ................................ GCAGCGTTAAATCTCTGTTTTTAAAAGCTTCGGCAA 1293823 32 100.0 33 ................................ ACATCGCCGTTTTCAGGATTAAACACTCTTCTA 1293758 32 100.0 35 ................................ AATAATCGGGTCGTGCTGAAGACCTTGCTTATCCA 1293691 32 100.0 36 ................................ AACCAATCTTGGGCGAAAGGGCAGATAGAAGAAGGC 1293623 32 100.0 34 ................................ ATGTTTAAGCATTCCACTCCATCCCTATCTTTAA 1293557 32 100.0 33 ................................ TATTGTAGAACGATCAATGATAGCGTTTATTTT 1293492 32 100.0 34 ................................ AGCGTCAAGCATATCTTCTTTTGCTTCTGCAATT 1293426 32 100.0 33 ................................ GCCGAAGCTTACTAATAACTACGCTCGGGCAGG 1293361 32 100.0 35 ................................ TACGACCAAATGCAAGATATTCTTTGGCTGGGTTA 1293294 32 100.0 35 ................................ AAAAAAAGGGAAGACGCGGAAACCGAAATGAGGCT 1293227 32 100.0 35 ................................ TTTGTGCTCGGCGCTATAACATTCGGATTGGGTTG 1293160 32 100.0 34 ................................ GAGTTGGCATTCCAAGAACCCTATTTAGCATTCT 1293094 32 100.0 36 ................................ TGCGCGCGCAGAATTCTTCCGCAGCCTGTTTGTCAG 1293026 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 86 32 100.0 34 GTCGCTCCCTTCACGGGAGCGTGAATTGAAAT # Left flank : GTGAGGTGTAATGTTAGTTCTCATAAGCTACGATATAAACACAACAGAATCGGGCGGAGCAAAACGCTTGAGAAATGTATCTAAAGCATGTTTAGATTACGGGCAAAGGGTTCAATTTTCTGTTTTTGAATGTGAAGTTGATCCTACGCAATGGGTATTTTTAAAAAATAAATTGCTGAAAATAATAGATTTAAAAAAAGACAGTTTAAGGTTTTATATGTTAGGTTCAAATTGGGAAAGAAAAATAGAACATTATGGCGCAAAAGAAGCTGTGGATTATCATGGCAGTTTGATAATATGATTTTTTGATTAACAGGCATATTATTTTTTTGACAATTTTTTATTAGTGCGAACATTAGGTGGTTTAGTTTTGTTCATTGACATCGCATATTGAAAAATGAATGAGAATTCAAAATCATAAAATAGAACTTGAGCGAATATGGAGGGTTCGCATAATTATAAAAAAATAAGTTGAATTTACAATAAGTTTTTGCAGTACT # Right flank : TTTTAACCGGTATGTATTTGGTTGGCAATTATTCAAACGACGCCCAATTTTTAGGGCGATTAGAACAAAAATCCTTACTATGTAATTATAAAACTCATTCAAACGACGCCCAATTTTTATAGTGTAACTTGAATATTAATCATTAATAACTCTGCATTTTTACATTGCAAAAAACTATATATTTTTGTTTAATATAACCATCTACATTTGGAGGTTATATGCCAAAACAAGAACTTGTATATTCGTTTGATTTAGGTTCAGGAAGTATTGGTGTTTGTGTGCGAAGCGGTAAAAATATTTTACATTTAAATTCTCTTCTATTAGATAATGAGTTTGCATCTGTTAAAGAAGCAGCTGCACAAAGAAGACAAATCCGCACACGAATAGCTCACAAAGAACGAGAAAAATGGTGGAATGAGCAAGCTAAAAAAGCAGGAATAGAAGTATTACAAACCGCACAACCTACAAAAGAAAATCCCAATCTTAAACCTGATAGCAGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTTCACGGGAGCGTGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.80,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //