Array 1 1814033-1805097 **** Predicted by CRISPRDetect 2.4 *** >NC_018720.1 Bifidobacterium asteroides PRL2011, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1814032 29 96.6 32 ............................C TCGCAAAAACCGACCCGGCTATAAAGGATATC 1813971 29 100.0 32 ............................. CAGCACTTGTATAAGGTTGGTGAATTCACTAG 1813910 29 100.0 32 ............................. GAGTTCATGCAAGAGCTGTATGCTGGTGGCGG 1813849 29 96.6 32 ............................C CGAAGTTTGTTGGCATGCAGGGTCCGTTTGAG 1813788 29 96.6 32 ............................C AACAATCGCCACAGCCACCATGCACAATATGA 1813727 29 100.0 32 ............................. TCAGCTAACAACAGTTCCTTATCGTTGTACTG 1813666 29 100.0 32 ............................. ATGCCAGCCTGGAACTCACGCCAGCAGTGTCA 1813605 29 96.6 32 ............................G AGTTCAGGCGGGAATAGCTCATTGCCGATGAT 1813544 29 100.0 32 ............................. GCCGGAGAAACGCCGTCAGAGCTGTAGCAGTC 1813483 29 100.0 32 ............................. GACCTTTCGGCCATCTGTGCATTGTTGTATGT 1813422 29 96.6 32 ............................A CGGGCGCCCTAATCAACAGCGGCAGATACAAC 1813361 29 96.6 32 ............................C CTCTGGTGGTAACGCTCAGAGTCCCGTGACCA 1813300 29 100.0 32 ............................. AATAAGGTCTCTGCACACTTCATAACCGATTT 1813239 29 100.0 32 ............................. CGTAAGTATTTTCAGTGGTCTGGTTCATGTAG 1813178 29 96.6 32 ............................G GGTCACAGTACGCTGCCAATGGCATGATGATT 1813117 29 100.0 32 ............................. TTTCTTGTAACAATTCCTGATCTATGTCTGTC 1813056 29 96.6 32 ............................C CGGAGCCCGAGGACAACGGATTGGAAAAAAGA 1812995 29 100.0 32 ............................. ACCCGATTTACCCCGCACAAGACGTTGAACGT 1812934 29 100.0 32 ............................. TATGTTGACGTTCGGGCGAGAGCCACATATAA 1812873 29 100.0 32 ............................. ACGTGCCCACCCTGGGCAACTGGCTGCGAGCC 1812812 29 96.6 32 ............................G CCTCCCCCAGTCGCCGGCACCGATGCCGCCAA 1812751 29 96.6 32 ............................C ATCGGAAGCGCTCACACGCACATCGACCCTTG 1812690 29 96.6 32 ............................C TTGTCCCTGTCATCCCTGTCGGCTTTCGGGCA 1812629 29 96.6 32 ............................C CCAGATGGGAATCAACAATGCTTATGCACAGG 1812568 29 100.0 32 ............................. TCGCCTTCATGGAACCCGGTTCGGATCAGAAT 1812507 29 100.0 32 ............................. GGATTTTGTAGGCATCGGAAAGATAGTGATCA 1812446 29 96.6 32 ............................C CATCATGAATCCATCGGTGTTGGCGTAGATGA 1812385 29 96.6 32 ............................C TTCCGACAAAACCGCATGGATACACGTCAAAC 1812324 29 100.0 32 ............................. AAAAGTTGGACATATTATTTCAAAAAAGTTAT 1812263 29 96.6 32 ............................A TTCAATCATATCAGCCACCCATAAGCCCAACA 1812202 29 96.6 32 ............................C GGCATCGCCACCAGCGCGCAGAATATGAAAAC 1812141 29 100.0 32 ............................. TTTGAAAAATACGGATTGGCCTGGCTGACGGC 1812080 29 100.0 32 ............................. GCTGAAACTGGCGTGCTCATTGAGTTTTTTGG 1812019 29 96.6 32 ............................A GTGTCCTTTAGCCTGTCATGGTTGCGCAATTT 1811958 29 100.0 32 ............................. TCGCCACGAATCACACGGTCGGCCAGCTCCGA 1811897 29 96.6 32 ............................C CGGTCCCATAGATAGACCAAAGGCTCTCACCA 1811836 29 100.0 32 ............................. TCCCTCTCTATGTTGACACTGTTAACATTCTA 1811775 29 96.6 32 ............................C CTGGTATTGTATAGTCGATTCGTTTGCGTAAG 1811714 29 96.6 32 ............................C CGTATCTATCCGGGTGAACGGGTATGCACTAA 1811653 29 96.6 32 ............................C AGGAATATTTGGGTGACGAAATCTACGGAACC 1811592 29 96.6 32 ............................C AATGTGACCTCGTTGCTCAGGAATCTCAGATT 1811531 29 96.6 32 ............................C ATTTTCATCAGGCTCATCCTGAGTAGACACTG 1811470 29 96.6 32 ............................C AAGCTCTCTCTCCATATGTCATGAAACCCACT 1811409 29 96.6 32 ............................C GTGAGCTTGGTGCCGTCCTTGAGCTTGGGTTT 1811348 29 100.0 32 ............................. AACCCCGCCATTCCCATAGGAAGGCGGGGAGC 1811287 29 100.0 32 ............................. CAGCTTTCCTGGCATAATCCTCTTGCTGAATT 1811226 29 96.6 32 ............................C TCATTGCGCAAGGCCGGAAAGTTCAGCATATT 1811165 29 100.0 32 ............................. CTGCGCTGCCTCATCGACTACAAGCTCGGGGT 1811104 29 100.0 32 ............................. GACCTTGCAGAACGGAAGCTCTCTGATAATCC 1811043 29 96.6 32 ............................C ATATTTTCAAGGGACTGCCGCACGTTCCCCTT 1810982 29 96.6 32 ............................C CTGTGAAGCAAGGGTAGGGGCTGAATTTTTGA 1810921 29 100.0 32 ............................. ACGCCAAGAATCCAGGAGGATCATGAATTCGC 1810860 29 96.6 32 ............................G TCATCGCTATGCTACAAGCCGTCGTCGAATGA 1810799 29 100.0 32 ............................. TCGATGTGAAACTTGGAAGATGTTTTGTTGAA 1810738 29 96.6 32 ............................C TTCGGCACCATCGGGGCGCTCGTGGTCACCCC 1810677 29 96.6 32 ............................C ACTGACATGCATCTATATCATAATCACGGAGA 1810616 29 96.6 32 ............................C AACAAGGCCGTGCTGGACCGGCAGACCGCCAC 1810555 29 96.6 32 ............................C CGCGGAGGTGCATCGTGGCGCTCAACCAGAAC 1810494 29 96.6 32 ............................C TGCTTCATGACAAGGCGACCATATGGAACGAA 1810433 29 96.6 32 ............................C CAAAGGATCATCGATATCAGCGGTCAGGATAT 1810372 29 96.6 32 ............................C AGCCCCATCACCGGAAACACCAACAACAAGTA 1810311 29 100.0 32 ............................. GCACGGAGAGGTAGGTGTGCGATGGCCGAGGA 1810250 29 96.6 32 ............................C CGTGTATGCCCATCCTATCGGCCATCCGTATC 1810189 29 96.6 32 ............................G CCTGGAACTGTCCGAACGCATCGGAGGCAAAG 1810128 29 96.6 32 ............................C GACGTTTGGATACGGGAAAACGCGCCGGTTCT 1810067 29 96.6 32 ............................C ATATTTTCAAGAGACTGCCGCACGTTCCCCTT 1810006 29 96.6 32 ............................C AACCAGCAAAAAGGGCCGCAGTCGCTTGCCGA 1809945 29 100.0 32 ............................. TCGCCTATGTTCCGCATGGCTGCCGGTGAGAT 1809884 29 96.6 32 ............................C AACGGTATCCGCAGCTGATCTATACCATCAAA 1809823 29 96.6 32 ............................C TAATGTCAAACGATTGCCGAATGCGCCGAGAG 1809762 29 100.0 32 ............................. CTGCGCTGCCTCATCGACTACTAGCTCGGGGT 1809701 29 100.0 32 ............................. TCCGGGCCGCCGATGACGTTGCTCAGCTCCTG 1809640 29 96.6 32 ............................C CAGGATGATACCAGCGATCAGCCCGATCCGCA 1809579 29 100.0 32 ............................. GACGACGGATGGACTTTTCGGCCGCTTCCTTG 1809518 29 96.6 32 ............................A CTGCAAATTTTGTTGATTTGACAGATTTGTTG 1809457 29 100.0 32 ............................. TACGGCCAGCAGTTGCACACGTCCAAGGTGGA 1809396 29 96.6 32 ............................C TTCGCCACCATCGGGGCGCTCGTGGTCACCCC 1809335 29 96.6 32 ............................C CGGTCATGTCCTTTCCCTGGACAGCAAACAAC 1809274 29 100.0 32 ............................. TGGAGGGCGTTCATGTCAGGTGCGTGACCGTG 1809213 29 96.6 32 ............................A CCCTCACGGCCAGCCGACTGCCTTTTCCGCAG 1809152 29 100.0 32 ............................. CGGTATCGCCACGAATTCCTTGATACCGTTGT 1809091 29 96.6 32 ............................A ATGTCACCGCAGAAGAGCTGGTGCACTGGTTT 1809030 29 100.0 32 ............................. CCATGCGCATCCAAGCAACGCATCAATTCAGT 1808969 29 96.6 32 ............................C AAGGTAGTGGAATTCAGGGACTCGCTCAAGCT 1808908 29 100.0 32 ............................. CGTATTCCGCTCTGAGGACCGTCGCCAACATC 1808847 29 96.6 32 ............................G CCAAAGACGAAGAGGATGCGCCTGCCGAGGTT 1808786 29 100.0 32 ............................. CTCGTTGCGCAACGCCTGCCCGTCGTCAGTGT 1808725 29 89.7 32 ................T..........TC GCAGTATCCGAACGCATCGTTGGACCCCTCGT 1808664 29 93.1 32 ................T...........C CTTTGCCCTGGACGATCAGCTTTTGACAGTAC 1808603 29 96.6 32 ............................G TCGTTTATCCGGTCGTCGTCACTCATACCCTC 1808542 29 96.6 32 ............................C GCACCCCGACTGCATCGTCAGCGTCAGCTGGG 1808481 29 96.6 32 ............................C TATGCAGTTCGTGTCTTGCTGGTAGTCTGCTG 1808420 29 100.0 32 ............................. GTCAAGGCTGTGGCTGATGGTATGGATATCAG 1808359 29 96.6 32 ............................G GCGTCCGGAGCCAGCTTTTCGATCACCAAGAT 1808298 29 100.0 32 ............................. TACTTCGCCTGGGATATGGCGTATGTGTACGA 1808237 29 93.1 32 ..........................T.C ATGGACTATCTCGCCATCATCGCCGGTGCCCC 1808176 29 100.0 32 ............................. TATTTTCAACCTGTGCGGCCAGGGTCGGGGCG 1808115 29 96.6 32 ............................C GGTAAGACCGCAAGCAACATTAAAAGGATTAT 1808054 29 96.6 32 ............................G GCCGGCCAGAAGGTATCGGTGTTCAAAACCAC 1807993 29 96.6 32 ............................C AAAGACTACCAGCGGGAGATGGCCGCCATCAG 1807932 29 100.0 32 ............................. TGGATCCCTTGATGGCCATGCCATTGAGAAAG 1807871 29 100.0 32 ............................. GCTCCTTTCAACTCAATTGAGTTGGTATCTTT 1807810 29 96.6 32 ............................G GTCTTCGGGCAGACTGCGCAGAGCACCAGCGC 1807749 29 96.6 32 ............................C GAATGGTGTCCAAGGAGGCGGCCGTGGGTGCC 1807688 29 96.6 32 ............................C GGGAGCAGCGTGACAAAGTCCTTGCCAGACCT 1807627 29 96.6 32 ............................G CGGCGGCGAAAGGCCATGGTGCCACCGAGTAA 1807566 29 100.0 32 ............................. GACCCGACAAAACGTACTACGCTGCCGATAAT 1807505 29 96.6 32 ............................A CCACTTGTTCGGTGTGGCCTGCGCAAGTGACC 1807444 29 100.0 32 ............................. TTATTTTATAGACAGTCTGAACGGTTTCGGAA 1807383 29 96.6 32 ............................A GGCTGGCTATACTTTTGACCAGATAGCACTTA 1807322 29 96.6 32 ............................C GCGATCACATCGTCAAGCCTACAACAAGGTAA 1807261 29 100.0 32 ............................. ATCAAGACCACTAACAGCCTTTAAAGCCTTTC 1807200 29 100.0 32 ............................. TCGCACCGACATTGCTTTCCGTGTTCCACTGT 1807139 29 100.0 32 ............................. GCCAGGCCTGCCACCATGGGCGAAGGTCACAT 1807078 29 100.0 32 ............................. TCTATCATATCAGCCACCCATAAGCCCAGCAA 1807017 29 96.6 32 ............................C ACGTCCATGATCGCATTGTTTCCTGTGATATA 1806956 29 96.6 32 ............................C GCGAGTCTGTATGGCATGTACGTTATAGGAAA 1806895 29 100.0 32 ............................. ACTGCTTGGTCTTTTGGTCATAAAAAAGGATG 1806834 29 100.0 32 ............................. TCTCCCCTAGCTTCAACAGTTTCTCCAGATGG 1806773 29 100.0 32 ............................. GCATACAACGGAGCGGACAACGCGCAGATAAC 1806712 29 96.6 32 ............................C AAACTGGTGGATTATCTCAACGATATGTCCAA 1806651 29 100.0 32 ............................. CCACGGTTGTAGACCTTTCTGCCATGCCTCAA 1806590 29 96.6 32 ............................C TTCTCCGACCCGATCACGCTTGGCATGATGCA 1806529 29 96.6 32 ............................C GTGTCACGTTCGCATTGACGTAATCCACTGAT 1806468 29 96.6 32 ............................C TCGATATACGATGTCAGGTCCTTCCATAGGCG 1806407 29 96.6 32 ..............T.............. CACAATGAGACCATCCTGACTCTGCAAGTCGT 1806346 29 100.0 32 ............................. AATTCATCACCCGCTGCTGTTCCCTGCGCGCC 1806285 29 100.0 32 ............................. GGTATTCAGCATGTTTTTTGACTCTACGGCTG 1806224 29 96.6 32 ............................C TACAAAAAGCAGCCGATGACGATGCTCACCTG 1806163 29 96.6 32 ............................C TGCATGTAGATCATGGGCTTGATGTCGTAGAC 1806102 29 96.6 32 ........T.................... CCTGCCCGTACAGGGCGGACTTGGCAAACTGC 1806041 29 100.0 32 ............................. CGATCCTGGCGCTCAGATGCGCCATGCCCGAC 1805980 29 100.0 32 ............................. TCACACGTCGAATGGTATACAGGCAATGGACA 1805919 29 100.0 32 ............................. GCTTTGGAGGCGACATTCTGGACGATGCCGGA 1805858 29 96.6 32 ............................C TTGACGATCCGCAGCCTGGGGGTCATGTCCGG 1805797 29 100.0 32 ............................. CCTCACGTTGCATGAGGCACAACGTCTGAAAA 1805736 29 96.6 32 ...................C......... CCGGCAGTCAGCGGCAGGCTCGGCCGGCGGCA 1805675 29 100.0 32 ............................. TCGGTCATCGGCAGCGTACGGCTCGAAGACCT 1805614 29 96.6 32 ............................G TCCAGCGAGCTCAAAGGCATCTGGGACAAGGC 1805553 29 93.1 32 .............G..............G GAGGCCAGGGTGACCCGGGTCCCGGCACTGAT 1805492 29 96.6 32 ............................C GGTCGAGAAGAAGCGGGTGCAGCTGTGGAAGA 1805431 29 93.1 33 ..............T.............C GACCCCAAGGAGGCCCTGACGGTGGACGGTGAC 1805369 29 100.0 32 ............................. GCTCGTTGGATGCATACCGATACATGGCATCT 1805308 29 89.7 32 .....T........T.............C CGTGCAGAGCTAGCTACAGCCATGTCAGTGAG 1805247 29 96.6 32 ..............T.............. GGTTTCCGGTTTGTCGTCTTTGCCTTTAGGTT 1805186 29 93.1 31 ..........T........T......... GGATCAGGGATAGGGTTCAAGAAGGAGCCAA T [1805160] 1805125 29 89.7 0 ......T......T...........C... | ========== ====== ====== ====== ============================= ================================= ================== 147 29 97.7 32 GTGTTCCCCGCATCCGCGGGGATGATCCT # Left flank : GCCACATCACCGCTAGGGTTCGGGACCGGCTCTGGGAACGCATCACAGGGCAGATCCGAACCGGCAAGGCCATTATGGTCTATTCCGCCCGCAATGAGCAGCATCTGAGTTTCAAAGTGCATCGCTCAGATTGGAACCCGGTAGACTGTGAAGGATTGACTCTTATGGAGAGGCCTACGGATGGCGGCGATGGCAGATCTGCGGGTGGTAGAAACCGATACCGCCGGACTGGTTGGAGCAATGCCAGCAAGTACAGACGTGCGGCGAGGTTCCGGCGCTCGCAATCCGGCTGAGCCCAAGCGGGTCTGCACTTTTCAGATGAGTTTTGCCGATGAGTGCCGAGTACTGATTATTAAGCCAGTGCATTGATAAGGAGTTTGGTGTATATGGTCTGAATTGTAATGGCTGAGACGGGGAATAGAGGGGGGCTCGAAATGCAAACTCATTAAAAATCAGAAATCTTGGTTATTGTATTGTTGGGATTGCAAGGATTTCTAAGT # Right flank : AAAGGACATCTAATGGATGCCTTCAGGTTCACCATTATGAGAGGAGACGACCAGAAAATGCATAAGGCTTTAATAAGCGAAATGGCATCCAGGGATTGTGCCTGCACCCGTCATGACAGCATTCCTGAGGATCTGATTGACGGCTATCCGCCGAGACACGCATAATCGAGAAAATGGGTGAAACTAAGCTCCTGGTCTGGAATTCGCTGGATGATGTGGACAAGAGAATGATCCAATCGGATTGCGTATACTACGGTACAGGCTGCGGCGGCGAAACAGAGGTGGGTTTCTACGACGTTATCCGCATAATGCGATTCGACTGGTTCATTCACGTGCTCCCACATGCTGTTTCAATCAGCAAAAGAATCGCTATAGGAGCGTGGCGGAGAATCCATAACAACATTATGGTTTGAACATGAGTATGATTTAAACCCGAGCGTTTGATTCTCTGGGGATGATCCAGCCGTCTATTCGATTAAGAACGAGAATACCGCGTGCTC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.52, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCATCCGCGGGGATGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCATGCGCGGGGATGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //