Array 1 14-592 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEVF01000003.1 Escherichia coli strain KCJK8468 NODE_3_length_82634_cov_4.759863, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 14 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 75 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 136 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 197 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 258 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 319 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 381 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 442 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 503 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 564 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 10 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATGCATGCTTAGTG # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [13.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1216-89 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEVF01000020.1 Escherichia coli strain KCJK8468 NODE_20_length_45078_cov_5.267981, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1215 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 1154 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 1093 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 1032 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 971 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 910 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 849 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 788 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 727 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 666 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 605 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 544 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 483 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 422 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 361 29 100.0 32 ............................. CCTAGCCCGATTATCGGCATGAGCGATGCGGA 300 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 239 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 178 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 117 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //